Solenopsis invicta (red fire ant): 105195176
Help
Entry
105195176 CDS
T03916
Name
(RefSeq) spatacsin isoform X1
KO
K19026
spatacsin
Organism
soc
Solenopsis invicta (red fire ant)
Brite
KEGG Orthology (KO) [BR:
soc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
soc03400
]
105195176
DNA repair and recombination proteins [BR:
soc03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
105195176
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Spatacsin_C
DUF7763
Motif
Other DBs
NCBI-GeneID:
105195176
NCBI-ProteinID:
XP_011158763
LinkDB
All DBs
Position
5:22490180..22498019
Genome browser
AA seq
1804 aa
AA seq
DB search
MSEKKAVGGIPVECLTGESAAIWSGWRILGDRELVREASAKGTHVKLAYKCLACRRNCSV
EQACIYFNKEVDTWVNELLNKKQVYRASHILKNMGKDPNEYIFAASIKSKDPLLRNYLCE
YMINATGFKTEHIAAWNIIKSIEQYEEKCNIPNGLSSCICIDDVTKLPQNIEQALRTELY
FFLNDPEILGNVSNNILWDYLLSNNKINALKMWIEEKYNPDVLQTSDKIDPHLKLLFTNL
NITPDMVDCIDSSSASDLVKNLTKNYLCRYGIYTKEEKSDLKSILNRSFGCGITLEELST
ILSLPSCNIDKTEFFQNIDQQLCLTHCSQSSHTQEDDLKLKKLFYVLTDMCNARNNYEDA
LLHGIVESIDYISDDFNDYLKTNYLVTLALIFLQLWQTQSALCNEANSSEKNTLMRDIFT
NKTVLKIGTRVISQEVLQAALTHIPRLQCIIENRNETDDITVYDLLDGYRNLNSKLLFKW
RFKNEPMPTFSSENLIKKYGYQETLTYGYYLKEGRPNLAVHSLTRTTKLLGNVSSHRKFK
AALYAHVLALRNLDKSDIVCSCIAFIEMLRIDSSNLRLHVTVAKYVQEQLNISIGNLLEN
VVYKNQTDLKSVILYLEQSFQKYLADEAFTCDSAQFVEALKMWDIIIRFARVHNCGLPDT
LPKYLADRDLWFEFIVVCHIFAYPVIQVLENAKLFNNANVREHLLTCLSNDKLGKFLPYD
EQKTESHNTKQSSSKQRKIGAKGNESSESTSTISGIEIDTTDVADAKDISNSSISTSSND
NLWLTILNCHQSQDPPKALINASRSNLRPILTVLATCYEPSSVAAYCYCWMVISTGREDI
LLDYAECLEQQIWPSDKVSKLLNKMIQCGYINTINRAYKIFMPDSIMNPFFEFLTQAISY
GEFKENQRHLIEFKSQCSSLKCNKIMDWDSVHFTYLKNLYWVAVVAIQCIVTTLAYGFRS
TPLRIKFLEVLIKCNFSADLPAAIPDFQRLLDVTRILQKTDVTLNFKAITLNDNAYNFDV
EIQRCINDLTATENYSAALELACCAKLNSSEIILAQFRSTFKQSMNKDGQVNSAFWMQCA
QDFNKFHVSPQVAVEFFVEHAEKVESHKERYEVLKLAYETLKNTEIEQQTIDTLEMAMWK
SCILAGPDNIEFEKNDHIFNKLKTELLSGLDKLQVTCSLIDESEKDAAEILINKLIDLGK
LDIALRISVIFNYNHKDLQILMLCLSLAEGEISPADLTSQQKSLLEEGNQSRQQKYSTLR
NRGLQRFSSSSSLSTISSIVEPSKTNVTTNNRHLQIECTSILEKSSKILVHGNEICFRII
SCYKLAMRLGKTYQSLLILKDPIKFLQEITESNIENKLETASDIITSYKIKTENVATFLT
ENITTHINCAIEEGQEDLIFMWGYSLNSHFHLIMELCSDISLLGLKLLKTAQSLLGRYIS
THDEKRNVSGLKTIVELLIRSHDCFTASCNMEGIASVLRKCQNLANTLQILKHWTLLVRL
VTGVGRFTEMNYIFQILKENDQFESLLGQGLDKVPGLKMALLEFLKRQCPEDKELFTLVA
LHFRLYYEIALMWENEAKEIITKLISDILKECGRGVTGIPVEIKFTKDDYVQKQLQLAVT
NFTHATQYYLQDKKLNFASRCSHQAQLVALQISLLNAVSQNQQAVCLLNLKRDELERILC
HILNFPQALIVIRAYNYHADWVNLIYHHCILKGETKYLKEYMTVNNLTSTIVQDCARRYR
LEKSINHSMTDNMKTLVSELSDVECKYMLASQLGFKDIVEEMLNNSLVGSYLKDTIWKKG
YTAL
NT seq
5415 nt
NT seq
+upstream
nt +downstream
nt
atgtctgagaaaaaggcggttggtggtattcccgtggaatgtctaactggagaatcagct
gcaatatggtctggttggcgtatactgggagacagagagcttgtaagagaggcttctgcc
aaggggactcatgtaaagttagcttacaaatgcctcgcgtgcagaagaaattgttctgta
gagcaggcatgtatatattttaataaagaagtagatacttgggtcaatgagttgttaaac
aagaagcaggtttacagagcctcacacattttaaaaaatatgggaaaggatcccaatgaa
tatatttttgctgcctccataaaaagcaaagatccgctcttaaggaactatttgtgtgaa
tatatgataaatgccactggattcaagactgaacatattgcagcatggaacattattaag
tctatcgaacagtatgaagaaaaatgcaatattccaaatggattaagttcttgcatatgt
atagatgatgtaacaaaattaccacagaatattgaacaagctttacgcactgaattgtat
ttttttctgaatgacccagagattttgggaaacgtgtcaaataatattttatgggattac
ctattatctaataataaaattaatgcgctaaagatgtggattgaagaaaaatataatcca
gacgttctacaaacctcagataaaatcgatcctcatttgaaattattatttacgaattta
aatattacacccgacatggttgactgtatagattcgtcaagtgctagtgaccttgtaaag
aatttaactaaaaactatttatgtagatacggtatttataccaaagaagaaaaaagcgat
ttaaaatcgatattaaatcgttcctttggctgcggtatcacgctggaagaactcagtaca
atattatccttaccttcctgcaatattgataaaacggagtttttccaaaacatcgatcaa
caactgtgccttacacattgctcgcaaagctctcatactcaggaagatgatttaaaactt
aagaaattattttacgttttaaccgatatgtgtaacgctcgaaataattacgaagatgcg
ttgttacacggaattgtagaatcaattgattatatctccgatgattttaatgactatctg
aaaacgaattacttagtaaccttggcattaatatttttacaattgtggcagacgcaaagc
gcgttgtgcaatgaagcaaactcttcagagaagaatacactgatgagagatatatttacg
aacaagactgtgttaaaaatcggcacgcgtgtcatctcccaagaagttcttcaggctgcg
cttacgcacataccgaggctacaatgtatcatcgagaatcgaaatgaaacagatgatatt
acagtatacgacttgttggacggctatagaaatttgaattctaagctcttatttaaatgg
cgcttcaagaatgaacctatgcctactttctcgagtgaaaatctcattaagaaatacggg
tatcaagaaacgctaacatacggttattatctgaaagagggaaggccgaatttggctgtg
catagtttgacacgcacgacgaagttacttggaaatgtatcctcccataggaaattcaaa
gcggctttatacgcgcatgttctcgctttgagaaatctagacaagtctgatattgtatgc
agctgcattgcgttcatcgagatgctgagaattgactcgagcaatttacgattacacgtt
actgtggcaaaatatgtgcaagagcaactaaacatatccataggaaacttattggagaat
gtagtgtataaaaaccaaactgatttgaaatctgtgatattgtatttagaacagagcttc
caaaaatatttagcagatgaagcttttacgtgcgatagtgcacaattcgtcgaagcgttg
aaaatgtgggacatcatcatacgctttgcacgagttcacaattgtgggttgcccgacacg
ttgccgaaatatttagcagatcgtgacttgtggttcgaattcattgtagtctgtcatata
ttcgcctatcccgtaatccaggtcctggaaaacgctaaattgttcaataacgcgaacgta
cgggaacatctgttaacgtgtttaagtaacgataagctaggcaaatttctaccatatgac
gagcaaaagacagaatctcataatacaaagcaatcgtcgtcaaagcaacgtaaaattgga
gcgaaaggaaatgaatcttcagagtctacttcaaccatatcgggaattgaaatagataca
actgatgtagctgatgccaaagatatctctaacagttctatctcgacttcttcaaatgat
aacttatggttaactatactaaactgtcatcaaagtcaagacccacccaaagcattaatt
aatgcatctcgctcaaatttgaggcctatattaactgtcttagctacgtgttacgagccg
tcctctgtagcagcatattgctactgttggatggtaatatcaacaggaagagaggacata
cttcttgattacgcggaatgtctagagcaacaaatatggccttccgataaagtatcgaaa
ttactaaacaaaatgatccagtgtggctacattaatacaattaatcgagcttacaaaatt
ttcatgcctgatagtattatgaatccgttctttgaatttctgacgcaagcaattagttac
ggcgaatttaaggagaatcaaaggcatttaatagagtttaaatcgcaatgttcctcgctt
aaatgcaataaaattatggattgggacagcgttcattttacatatttgaaaaacttgtat
tgggttgcggtggttgcaattcaatgcattgttacgacactggcctacggctttcgaagt
acgccattacgaataaagtttctcgaagtgctaataaagtgtaatttttctgcagattta
ccagctgcaataccggattttcagcgtctgttagatgtaacgagaattctgcagaaaacc
gatgtgacattaaatttcaaggccattactttaaatgacaatgcatataattttgatgtg
gagattcaaagatgcattaacgatttaacagcaaccgagaattacagtgctgcattggag
ttagcatgctgcgcaaaattaaattcatccgagatcatattagcacaatttcgaagtact
ttcaaacaatctatgaacaaagatggtcaagtaaattctgccttttggatgcaatgcgct
caggattttaacaagttccatgtttcacctcaagtagcagttgaattttttgtcgaacat
gcggaaaaagttgaatcgcacaaagaaagatacgaagttttaaaattggcctatgagact
ttgaaaaataccgaaatcgagcaacaaaccatcgatactctagagatggcgatgtggaaa
tcgtgcattttggctggacccgataatatagagtttgaaaaaaatgatcacatttttaat
aaattaaaaacggagttactatctggtttagataaactgcaagttacttgctccttgata
gacgaaagtgaaaaagatgctgcggaaattttaataaataaattaattgatctgggcaaa
ttggatattgcgttacgaataagcgtaatttttaattataatcataaagatctgcaaata
ttgatgctatgtttaagtttagcagaaggtgaaatttcaccagcggatttaacttcgcag
caaaaaagtcttttggaagaagggaatcagagcaggcaacaaaaatatagtactctgcgt
aatcgcggtctgcaaagattttcgtcgtcgtcgtccttgagcacaatttcgtcgatcgta
gaacctagcaaaacaaatgttactacgaacaatcgtcacctccagatcgagtgtacttca
atcttagaaaaatcatcgaaaattctcgtacacggaaatgagatatgttttcgaattatt
tcgtgttacaaactcgccatgcgtctaggaaaaacatatcaatcactattaatactgaaa
gatccgataaagttcttacaggagattacagaaagcaatattgaaaacaaattggagact
gctagcgatataataacatcctacaagattaagacagaaaacgtggcaacattcctaact
gaaaatattacaacgcacataaattgtgccatagaagagggccaggaagatttgattttt
atgtggggctattccttgaattcgcactttcatttaataatggagctttgcagtgacatt
tcgttattaggcttaaaattgttgaagacagcacaatcgttgttgggaagatacattagt
actcacgatgaaaaaagaaatgtttcaggactaaaaacaatagtggaattgttaataaga
tctcatgattgtttcacggcttcttgtaacatggaaggaatagcttcagtattacgtaaa
tgtcagaacctcgcgaatacgttacaaatcttaaaacactggacactattggtacgcctt
gtaactggtgttggtcgatttaccgaaatgaattacatatttcaaatcttgaaagaaaac
gatcaattcgagtctttattaggacaaggtttggataaggttccaggtctaaaaatggca
ttgctggaattcttgaagcgccaatgtccagaagataaggaactgtttactttagtggca
cttcatttccgcttatattatgaaatcgcacttatgtgggaaaatgaggcaaaggaaata
atcacgaaattaatatctgacatattaaaagagtgtgggagaggcgtaaccggtattccg
gtagaaataaagtttactaaagacgattatgttcaaaaacaattgcaactggctgtaact
aactttactcatgctactcaatattatttacaggataagaaactaaatttcgccagccgg
tgctcgcatcaagcccaactcgtcgcgcttcaaatttcattactgaatgcagtatcgcaa
aatcagcaagcggtatgtctgctgaatttgaaaagagacgagttagaaagaatattgtgt
cacatcttaaattttcctcaagctcttattgttatccgcgcttataattatcacgcggat
tgggttaatctcatttatcatcactgcattctcaagggggagacaaaatatctcaaagaa
tacatgacagttaacaatcttacatctacgattgtacaagattgcgcgcgtaggtacaga
ttggaaaaaagcatcaatcattccatgacagacaacatgaagactctagtatccgaacta
tcagatgtcgaatgtaaatacatgctagctagtcagcttggctttaaggacattgtagag
gaaatgctcaataattctttagtaggttcctacttaaaggacacgatttggaaaaaagga
tatactgcactgtga
DBGET
integrated database retrieval system
