Solenopsis invicta (red fire ant): 105195248
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Entry
105195248 CDS
T03916
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
soc
Solenopsis invicta (red fire ant)
Pathway
soc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
soc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105195248
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
soc03019
]
105195248
03041 Spliceosome [BR:
soc03041
]
105195248
03009 Ribosome biogenesis [BR:
soc03009
]
105195248
03016 Transfer RNA biogenesis [BR:
soc03016
]
105195248
Enzymes [BR:
soc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
105195248
Messenger RNA biogenesis [BR:
soc03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
105195248
Spliceosome [BR:
soc03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
105195248
Complex C
U4/U6.U5 tri-SnRNP related factors
105195248
Ribosome biogenesis [BR:
soc03009
]
Eukaryotic type
Pre-60S particles
Helicases
105195248
Transfer RNA biogenesis [BR:
soc03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
105195248
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
ResIII
Helicase_C
ATPase_2
Death_3
nSTAND3
Motif
Other DBs
NCBI-GeneID:
105195248
NCBI-ProteinID:
XP_025988225
LinkDB
All DBs
Position
1:complement(26908342..26913307)
Genome browser
AA seq
1008 aa
AA seq
DB search
MANFTEDLFDVFDEHGDDAEISDISKKIEPELRIKRQLDTDDDKSTIKKLRHESIVDDIN
IEEIACRIKVNSIETMESCTHEIAIPPDQEYVPLERQNQMAKEFKFILDPFQKEAILCID
NNQSVLVSAHTSAGKTVVAEYAIACSLRDKQRVIYTTPIKALSNQKYREFYEEFKDVGLI
TGDVTINPTASVLIMTTEILRNMLYRGSEIMREVGWVIFDEIHYMRDKERGVVWEETLIL
LPDNVHYVFLSATIPNARQFAEWVVHLHKQPCHVVSTDYRPTPLQHYIFPVGGDGIHLVV
DETGQFKEDNFNRAMACLQNMGDAAKGDTKGRKGGLRASNSGQSNIFKMVKMIMERNFAP
VIIFSFSKKDCEVYAMQMTKLDLNTLAEKKLVDEVFNNAIDVLSDADKQLPQVMNLLPLL
RRGIGIHHGGLLPILKETVEILFGEGLIKALFATETFAMGLNMPARTVLFTAPRKFDGKD
FRWITSGEYIQMSGRAGRRGLDDKGIVILMIDEQVSPMVGKAIVQGKPDPINSAFHLTYN
MVLNLLRVEDINPEYMLERSFFQFQNQAGIPVLYNKVKELCSAYNTVNVDRYDEISSYHD
IREQLNRLSAEFQSFLTQPEYLVPFLQPGRLVKVKNGNETFDWGIIVNFKKKNPKNPVKG
TTVIIIDILLHLSKESKEGNPIPCRDDREGEMEVVPVSHNLISQISSLRVYYPKDLRPPD
NRKSVLKSIREVKKRFPDGPPLLNPITDMHIEDQAFKDIVKKIEALEKRLYAHSLHKDPN
VNVLYEQFLHKEELATQLKQAKEEFKQAKSILQMDELKCRKRVLRRMAYCTSADVIELKG
RVACELNGADELLMTEMIFNGLFNALSVPQMVALISCFICDEKSNEMPKSTEELSGPLRQ
MQDLARRIAKVSTEANLELDEDAYVDRFKPYLMDVIYSWCKGANFLQICKMTDIFEGSII
RCMRRLEEVLRQLCQAAKNIGNTDLENKFSEAIKLIKRDIVFAASLYL
NT seq
3027 nt
NT seq
+upstream
nt +downstream
nt
atggcaaattttaccgaagacttgtttgacgtttttgatgaacacggagacgatgcagag
atatcagacatttctaaaaaaatcgagccagaactgaggataaagcgacaacttgacacg
gatgatgacaagtcaaccattaaaaaattgcgacatgaatccattgtggatgatatcaat
atagaagaaatagcgtgtcgtataaaagtgaacagtatagaaaccatggaatcttgtacg
cacgagattgctatccctccagatcaagaatatgtaccattggaacgtcaaaaccaaatg
gccaaagagtttaaatttatacttgatccatttcaaaaagaggcaattttatgtattgat
aacaatcagtcagttctcgtctccgcacacacgtcagctggtaaaaccgtcgtggctgaa
tatgcaatagcatgttcacttagggataaacagagagtaatatatactactccaatcaaa
gcgttgagtaatcagaagtatagagaattttacgaggaatttaaggatgttggtttaata
acaggcgatgttactataaatccaactgcaagtgtgctaatcatgactactgaaattttg
cgaaatatgctgtatagaggttcagagataatgcgtgaagttggatgggtgatttttgac
gagattcattacatgcgtgataaagagagaggcgtagtttgggaggaaacacttatattg
ttgccggacaatgtgcactatgtatttctttccgctactataccaaacgcgcgacaattc
gcagagtgggtggtacatttacacaaacaaccttgccatgtagtgtctacagactacaga
cctacaccgttgcaacattatatatttccagttggtggcgatggtatacatttggttgta
gatgagacaggtcaattcaaagaggacaattttaaccgagccatggcatgcctgcagaat
atgggcgatgcggctaaaggtgacacgaaaggacgcaagggtggtctacgcgcctcgaac
agcgggcaatcaaacatctttaagatggtaaaaatgatcatggaaagaaacttcgcacct
gtgataattttcagcttttcgaaaaaagactgcgaggtttacgcaatgcaaatgaccaaa
ctggatctgaacacactagcggagaagaaactagtggatgaagtttttaacaatgcgata
gatgttctcagcgatgcggacaaacagttaccgcaagtcatgaatttgttgccgcttttg
cggcgtggaatagggatccatcacggtggactcttgccgatcttaaaggagacagtcgaa
atattatttggcgaaggtctgatcaaagcgcttttcgccactgaaacattcgcgatgggt
ttaaacatgccggcacggacagtcttgttcacggcgcctcgtaaattcgatggcaaggac
tttcgttggatcacgtcgggtgaatacattcagatgtccggtcgcgccggcagaagaggt
cttgatgacaaaggaatcgtcatattgatgatagacgagcaagttagccccatggttggt
aaagctatcgttcaggggaagccagatccgataaactctgcgtttcacttgacctacaat
atggttcttaatcttctccgagtggaagacattaatccagaatacatgttggagagaagc
ttcttccagtttcagaatcaagctggtattccagttttgtacaataaggtaaaagaatta
tgtagtgcttacaacaccgtgaatgtggataggtacgatgaaatttcttcttatcatgac
atacgtgaacaactcaatcgactgagcgcagagtttcaatcatttctaacgcaaccagag
tacttagtcccatttttacaacctggaagattagtaaaagtaaaaaatggaaatgaaacg
tttgattggggcattatagtgaattttaagaagaaaaatccaaaaaatccagtaaaaggc
acgactgttattattattgacattttacttcatttatcgaaagagtctaaagaaggcaat
ccaattccatgtcgcgatgatagagaaggcgagatggaagtagttccagtttcacataat
ttaatttcacaaattagttcactgagagtgtattatccaaaagatcttagaccgcctgat
aataggaagagtgttctgaagtcgatacgggaagtgaaaaaaagattcccggatggtcca
ccgttactcaatcctattacagatatgcatatagaagatcaggcttttaaagatattgta
aagaaaattgaagcgttagagaaaagattatatgcacattctttgcataaggatcccaat
gtaaatgtattatacgaacaatttttgcacaaagaagaattagctacgcaacttaaacaa
gctaaggaagagtttaaacaggctaaatcaatacttcagatggacgagctcaaatgtagg
aagcgagttttaaggaggatggcatattgcacgtcggcagatgttatagaattgaaagga
cgtgtagcctgcgaactgaacggtgccgatgagttattaatgactgaaatgatctttaat
ggtctctttaatgccttgagcgtaccacagatggtagctttgatcagttgtttcatatgc
gacgaaaaatcaaacgagatgcctaaaagtacagaagaattaagcggcccgctcagacag
atgcaagacttggctcggagaatagcgaaggtctcgacggaagccaatctagaattggat
gaagatgcgtatgtcgacagatttaaaccgtatttaatggacgttatatactcttggtgt
aaaggtgcaaatttcttacaaatttgcaaaatgacggatatatttgaaggatctattatc
aggtgtatgcgacgtttagaagaggtacttcgacaattgtgccaagctgcaaaaaatatc
ggtaatacagatctagaaaataaattcagcgaagcgatcaaacttataaaacgggacatt
gtgtttgctgcatccttatatttataa
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