Solenopsis invicta (red fire ant): 105196196
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Entry
105196196 CDS
T03916
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
soc
Solenopsis invicta (red fire ant)
Pathway
soc03020
RNA polymerase
soc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
soc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
105196196
09124 Replication and repair
03420 Nucleotide excision repair
105196196
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
soc03021
]
105196196
03400 DNA repair and recombination proteins [BR:
soc03400
]
105196196
Enzymes [BR:
soc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
105196196
Transcription machinery [BR:
soc03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
105196196
DNA repair and recombination proteins [BR:
soc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
105196196
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
Motif
Other DBs
NCBI-GeneID:
105196196
NCBI-ProteinID:
XP_039304189
LinkDB
All DBs
Position
4:18639830..18688476
Genome browser
AA seq
1178 aa
AA seq
DB search
MSNIFGIEDDQYDEEDADEISSKLWQEACWILINAYFDEKGLVRQQLDSFDEFIEMSVQR
IVEDSPQIELQAEAQHTTGEIEKPVKHLLKFEQIYLSKPTHWEKDGAPSPMMPNEARLRN
LTYSAPLYVDITKTIEKDGEDPVETQHQKTFIGKIPIMLRSKYCLLAGLSDRDLTELNEC
PLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDGKYAYKAEIRSCLEHSSRPTSTLWI
NMMAKSGASIKKSAIGQRIIAIIPYIKQEIPIMVVFRALGFVADRDILEHIIYDFDDPEM
MEMVKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKEKRIKYAREILQKEMLPHVGISDFC
ETKKAYFLGYMVHRLLSASLGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRL
YAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFAS
TLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMLCPAETPEGAAVGLVKNLALMAYISVGSQ
PSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPDQLMATLRKLRRQMDII
VSEVSMVRDIRDREIRIYTDAGRISRPLLIVEGQNLLLKKRHINMLKERDYNNDGWQELV
GSGVVEYIDTLEEETVMIAMSPDDLRQEKEYAYCTTYTHCEIHPAMILGVCASIIPFPDH
NQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGI
NSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKESESKKIGDQEEQFEKPSRLT
CQGMRNAIYDKLDDDGIIAPGIRVSGDDVIIGKTITLPETDDELDSTTKRFTKRDASTFL
RNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPF
SCEGLTPDIIINPHAIPSRMTIGHLIECIQGKVSANKGEIGDATPFNDAVNVQKISTLLL
EYGYQLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPME
GRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRIHICNFCGLIAIANLRNNTFE
CKGCKNKTQISQVRLPYAAKLLFQELMAMNIAPRLMIH
NT seq
3537 nt
NT seq
+upstream
nt +downstream
nt
atgagtaatatattcggtatcgaggacgatcaatatgatgaggaagatgcggacgaaatt
tcgtcgaaactctggcaagaggcttgctggattcttatcaacgcatattttgacgagaaa
ggtcttgtacgacagcagctggatagctttgatgaattcattgagatgtccgttcagcgt
attgtggaggattcacctcaaattgagctacaggcggaggcacagcacaccacaggcgag
atagagaagcccgtgaaacatttgttgaaatttgaacagatttatctatcgaaaccgact
cattgggagaaagatggcgcaccgtctcccatgatgcccaatgaagctagattgagaaat
ttaacgtattccgcgccgttgtatgtagatatcactaagacgattgaaaaggatggtgag
gaccctgttgaaacgcaacatcaaaaaacatttattggcaagataccgatcatgttgaga
tctaaatattgcttgctcgccggcttatctgaccgcgacttaacggagctgaatgaatgt
ccgttggatcctggtggatattttattattaatggctcggagaaagttctcatagcacag
gagaaaatggcgacgaacaccgtttacgtatttagcatgaaagatggtaagtatgcctac
aaggcagagattcggtcctgcttggaacacagttcgcgcccgacctcgactttgtggatc
aacatgatggctaaaagcggcgccagtattaagaagtctgccataggtcaacgtatcatt
gccattattccctatatcaagcaggagattcccataatggtggtttttcgagcactcgga
tttgtggccgatcgcgacatactcgagcacattatctatgactttgacgatcccgagatg
atggagatggtgaagccatccctggacgaagcttttgtcatacaggagcagaatgtcgct
ttgaattttattggttctagaggcgccaagccaggcgtgactaaggagaagcggatcaaa
tacgcccgagaaattttacaaaaggaaatgctgccgcacgttggcataagcgacttctgc
gagaccaaaaaggcttattttctcggctacatggttcaccgactattatcggcgtctttg
ggaagaagggaattagacgatcgcgatcattacggcaataagagattggatttagccgga
cctctgctggcgtttttgttccgaggcttgtttaagaatttgatgaaagaggtgcgtttg
tacgcacagaagtttatagatcgggggaaagatttcaatctcgaactggcgattaaaacg
aaaatcattacggacggtctgaggtattcgctcgccacgggcaactggggtgatcaaaag
aaggcgcaccaagcgagagcgggtgtatctcaagtattgaatagactaaccttcgcatcg
acgttgtcgcatctgagacgagtgaactctcccattggaagggatggtaaactcgccaaa
ccgcgtcaactccacaacacattgtggggtatgctttgccctgcggaaactccggaaggc
gccgctgttggactggtgaaaaatcttgctctaatggcgtacataagcgttggctcgcag
ccctctcccatcttggagttcttggaggaatggtccatggaaaatcttgaggaaatagct
ccaagtgcgatcgctgacgcaacgaaaatattcgtgaatggctgctgggttggcatccac
cgggatccagatcaattgatggccactctacgtaagttaaggaggcagatggatatcatt
gtatcagaggtgtcaatggttcgcgatattagagaccgtgagataaggatatacacagat
gccggcagaattagcagacccttgctaatagttgagggtcaaaatttattattgaagaaa
agacatatcaacatgttgaaggaaagagattacaataacgacgggtggcaagaattggtg
ggtagtggagtagtggaatacatagacaccttagaagaagaaactgttatgatagctatg
tcgcccgatgatcttagacaagagaaagagtacgcatattgtacgacgtacacgcactgc
gagattcatccagcgatgatcttgggcgtgtgtgcctccattataccattccccgatcat
aatcagagtcccagaaatacttatcagagtgctatgggtaaacaagctatgggtgtgtac
attacaaattttcacgtgcgaatggacactttggctcatgtactgtattatccacataaa
ccattggttacaacgagatccatggaatatcttaggttccgcgaattgccggccggcatt
aacagcatcgttgcgatcctatgttacacaggatacaatcaggaggatagcgttattttg
aacgcaagcgctgtcgaaagaggcttcttcagatcggtattttatcgctcctacaaagag
tccgagtcaaagaagatcggcgatcaagaggaacagttcgagaaaccctcacgcctaact
tgtcaaggaatgcgcaacgctatatatgacaagttggacgatgacggaatcattgcgcct
ggaattcgagtgtcgggcgacgacgtaattataggaaaaacgatcactttgccggaaacg
gatgacgaattggatagtacaacgaaacgtttcacaaaacgtgacgcatcgacctttttg
aggaatagtgaaaccggtatagtcgatcaagtgatgctaactttgaacagtgaaggatat
aaattctgcaaaattcgagtgcgcagtgtacgcattccacaaatcggtgataaatttgca
tctcgtcacggacaaaagggtacatgtggaattcagtataggcaagaagatatgccattc
tcctgcgagggtcttacacccgatattattatcaatcctcatgctatcccttctcgtatg
actattggtcacttgatagaatgcatccaagggaaagtttccgccaataaaggagagatt
ggtgacgctactccatttaacgatgctgtaaacgtgcaaaagatttccacgcttttgcta
gaatacggttaccagttgcgaggaaatgaagtaatgtacaatggacacacaggccgtaag
attaatgcgcaagtctttttgggaccaacgtattaccaacgcttgaagcatatggtagac
gataagattcacagtagagcaagaggacctgtgcaaattttagttagacaaccaatggaa
ggtcgagcgagggacggtggactccgtttcggagaaatggaacgagattgtcaaatttct
cacggcgcggcacaatttttgcgagaacgtctgtttgaagtatcagatccatatagaatt
cacatatgcaacttctgtggtttaatcgcaatagcgaatttacggaacaatacttttgag
tgcaaagggtgtaagaataagacacaaatttcgcaagttagactaccgtatgcggcaaag
ttactgttccaggaattaatggcgatgaatatcgcacctagactcatgatccattga
DBGET
integrated database retrieval system
