Solenopsis invicta (red fire ant): 105196855
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Entry
105196855 CDS
T03916
Name
(RefSeq) collagen alpha-1(XXII) chain isoform X1
KO
K06823
collagen type XVIII alpha
Organism
soc
Solenopsis invicta (red fire ant)
Brite
KEGG Orthology (KO) [BR:
soc00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
soc04147
]
105196855
00535 Proteoglycans [BR:
soc00535
]
105196855
00536 Glycosaminoglycan binding proteins [BR:
soc00536
]
105196855
Exosome [BR:
soc04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
105196855
Proteoglycans [BR:
soc00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
105196855
Glycosaminoglycan binding proteins [BR:
soc00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
105196855
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
Laminin_G_3
DUF1554
Motif
Other DBs
NCBI-GeneID:
105196855
NCBI-ProteinID:
XP_025990791
LinkDB
All DBs
Position
6:9125247..9355081
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AA seq
1164 aa
AA seq
DB search
MPLRSLLLIFAFALCATCNRADFFGGKEVVYDLMVATVSSMMDENNLYMDDGVDGFPAFG
FRPGSEVKQPYRLYLPEKLPAEFTLVATFKPTSFRTSYLFAVLNPFETVVQLGIRISDGP
GSNQNVSLVYTNSDEHSHSEEVAKFTVPKLTKKWSKIVIKVLTNDVTLYLNCHEMARQRV
TRIPQELVFDTASTLYIAQAGPHIQERYDGLLQSLKLYAGHPPDLVKCSADFDFSADEEV
ASGDYDVSLFDGSGDADLNKISRDVDEDKSEESNPPPFITPPPPNPDYKGPKGEKGDKGD
KGESVRGPPGPPGPPGRDEDWLMKIPQGPPGQKGDPGTCTCNATALMSSFTMPKMIQGPK
GEPGVPGQEGKQGLMGLTGAAGPPGERGLHGPSGSKGDKGDIGIAGPEGPQGQKGEPGRD
GIPGEKGAQGPPGPPGKGEFSGYDPSWKPRNIYRPEGITMRPGLPGQKGEPGISGNPGPK
GESGIPGSKGIKGEPGYKGVKGDHGKDGPRGIQGFKGEPGAPGAPGLPGAPGENGRPAEK
GDKGDTGPEGKLGPPGPPGPPGMGGSGSINVGDLGFGTKGDKGDGGARGYKGDKGTKGEK
GDRGDSGPAGIPGINGIQGPQGDKGEPGKDGVSGLPGTPGTKGERGERGPPGATTVANSG
DYITIKGEKGAEGKRGRRGRPGPPGPVGPPGKPGTTGEIGLPGWMNTMKGRPGTPGIPGS
IGPMGPKGDKGEPGAPSPYGVSVGIKGDKGDDGFPGIPGQPGREGQRGPPGPPGPPGAPS
QGKYMPVPGPPGPPGPPGPPGLSLIGQKGEPGIGRSHVFGERDYYPPRQGARSSLDELKA
LRELKQLKELKEQLGVVTATRGPLESTTKIVPGAVTFQNTEAMTKMSSVSPVGTLAYIID
EQALLVRVNNGWQYIALGSLLPITTPAPPTTSPPPANPPFEASNLINQIPVKADGTGWYP
RMLRMAALNEPFTGDMHGIRGADYACYRQAKRAGLRGTFRAFLSSRVQNVDSIVRLGDRD
LPIVNIKGDVLFNSWKEMFNGNGAYFSQNPRIYSFNGKNIFTDFAWPDKVAWHGSHKLGD
RAMDTYCDAWHSSSSDRYGLGSPLTGGRLLDQVRYSCDNKFALLCIEVTSELVRRRRNAD
NRPDDDIEMSENDYMEYLEELMQY
NT seq
3495 nt
NT seq
+upstream
nt +downstream
nt
atgccgcttaggtcgttactgttgatcttcgccttcgcgctatgcgcgacgtgcaaccgc
gctgacttcttcggcgggaaggaagtggtgtacgatttgatggtggcaacggtgtcatcg
atgatggacgagaataacctttacatggacgacggcgtagacggatttccggcgtttggc
tttcgacccggctccgaagtgaagcaaccctacagactgtacctcccggagaaattgccg
gccgagttcaccctagtggccacgttcaagccgacctcctttagaacgagctacctcttc
gccgttcttaatcccttcgaaaccgttgtccaattgggcattagaatttcggatgggccg
ggctctaaccagaatgtctcactggtctacactaattcggacgagcattcgcattcggag
gaggtggcgaaattcaccgtgccaaagcttacgaagaagtggtcgaagatcgtcattaag
gttttgacgaacgacgtcaccctctatctcaattgccacgagatggctaggcagagggtt
accaggatcccccaggaattagtattcgatactgccagtacgctgtacatcgcgcaagcc
ggaccgcacatccaggaacgatacgacggtctactgcaatctttgaaattgtacgccggc
catcctccggaccttgtaaaatgctctgccgattttgacttttcagcagatgaagaggtc
gcttctggtgattacgatgtcagtttgttcgacggttctggcgacgctgatttaaataag
atcagtcgagatgtggacgaagacaaaagcgaggagagtaacccgccaccattcatcacg
cccccgcctccgaatccagattataaaggtccgaaaggggagaagggtgacaaaggggat
aagggcgagagcgtcagaggtcccccaggtcctcctggccctcctggtcgcgacgaagat
tggctaatgaagataccacagggaccacctggtcagaagggagaccccggcacttgcacc
tgcaacgccacggccttaatgtcttcctttacgatgccaaagatgatacaagggccgaag
ggtgagccaggagtacccggacaggaaggcaagcagggcctaatgggcctcacgggtgcg
gcaggaccgccaggggaaagaggactgcatggtccgtccgggagtaaaggtgacaagggt
gatattggaatagcagggccagaaggtcctcaaggtcagaaaggcgaaccaggtcgggat
ggaatacccggtgaaaaaggtgcgcaaggtccgccggggccgcccggaaaaggagaattt
tctggctatgaccccagttggaaacctcgaaatatttacagaccggaaggtatcacaatg
agaccaggacttccaggacaaaagggtgagccaggcatttcagggaatcctggtcctaaa
ggcgagtctggaatacccggatctaaaggtatcaaaggggaacctggctacaaaggtgtc
aagggtgatcatgggaaagatggtcctagaggaattcagggctttaagggtgaacctggc
gcacccggtgcaccagggttgcctggcgcaccaggtgaaaacgggcgaccggccgaaaaa
ggcgacaagggcgatacgggacctgaaggaaaactgggtcctccagggccacccggtcca
cccggtatgggaggttccggtagcataaacgtgggagatctaggctttggcacaaaaggt
gataaaggcgatggtggggcgcgcggatacaagggcgataaaggcacgaaaggcgaaaag
ggcgataggggtgactccggaccagctggtattcccggaataaacggtattcaaggacct
caaggagataaaggcgaaccgggtaaagacggagtatcaggattacccggtacacctggc
actaaaggcgagagaggtgagagaggtcctcctggagccactaccgtcgccaattccgga
gactatatcaccatcaaaggtgagaaaggcgccgaaggaaaacggggtagaagaggacga
cctggaccgcctggtcctgtgggtcctcccgggaaaccaggaactacgggagagatcggt
ctaccaggatggatgaacacgatgaagggtcgtcctgggactcctggaattccgggaagt
atcggtccaatgggacccaagggagacaagggagagcctggcgcaccgagtccttacggt
gtttctgtcggtatcaaaggcgacaagggagacgatggttttcctggaattcctgggcag
ccgggaagagaaggtcaaagaggacctccaggacctcccggaccacctggagcaccgtct
caaggaaaatatatgccagttccaggacctccgggtcctcccggaccgcctggtccgcct
ggcttgtctttaatcggacagaaaggagaacccgggatcggtagaagccatgttttcggg
gaaagagattactatccccccaggcaaggagccagaagtagtctggacgaattgaaagct
ctacgtgaactcaagcaactgaaagaactgaaagagcaattaggtgttgttactgctaca
aggggacctttagaaagtacaacgaaaattgtgccaggagctgttacgttccaaaataca
gaagccatgacaaaaatgtctagcgttagtccagtcgggactctggcttatatcatagac
gaacaagctttactagtcagagttaacaatggatggcaatacattgctctcggatcactt
ttgcctatcactacgccagcaccaccaacaacgtctccaccgccagcaaatcctcctttc
gaagcatccaatttaattaatcagatacccgtgaaagccgacggaacaggatggtatccg
cgaatgttgaggatggctgcattgaacgagccgttcaccggagatatgcatggtatacga
ggagcagactacgcttgctatcgacaagcaaagcgagcaggcttgagaggtaccttccgc
gctttccttagctctcgagttcaaaatgttgatagcattgtcagattaggagatcgagat
cttcctatagttaacataaagggcgacgtgctattcaactcttggaaagaaatgtttaat
ggaaatggagcgtacttctctcaaaatcccagaatctacagcttcaatggaaagaacatt
tttactgacttcgcgtggcctgataaagtcgcgtggcacggttctcataaacttggcgat
cgagcaatggacacttactgcgatgcctggcactcgagcagctcggatcgttatggatta
ggctcgccgttgaccggcggccgattgttagaccaagtacgatattcgtgcgacaataaa
tttgcgctgctctgcatcgaggtgacgagcgagctggtgaggagacgacggaacgccgac
aatcggccagacgacgacatcgagatgtcggagaacgactatatggagtacttggaggaa
ctcatgcaatactga
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integrated database retrieval system
