Solenopsis invicta (red fire ant): 105197227
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Entry
105197227 CDS
T03916
Name
(RefSeq) collagen alpha-5(IV) chain
KO
K06237
collagen type IV alpha
Organism
soc
Solenopsis invicta (red fire ant)
Pathway
soc04382
Cornified envelope formation
soc04512
ECM-receptor interaction
soc04518
Integrin signaling
soc04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
soc00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
105197227
04518 Integrin signaling
105197227
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
105197227
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
105197227
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
soc04147
]
105197227
00536 Glycosaminoglycan binding proteins [BR:
soc00536
]
105197227
Exosome [BR:
soc04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
105197227
Glycosaminoglycan binding proteins [BR:
soc00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
105197227
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
105197227
NCBI-ProteinID:
XP_011161821
LinkDB
All DBs
Position
3:25714598..25774268
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AA seq
1843 aa
AA seq
DB search
MRPRAAATSKIIGDASRGISRPVPFVLRITCVLALLVHAATWIPIAEAVICKDSYKCDCK
GIKGHQGFPGIPGPQGTEGLPGEIGPDGPPGPKGEKGAGGEFGATGEKGYRGDDGIQGFA
GAPGLSGNPGVPGVVGPDGLDGCNGTDGRAGAPGIPGVFGPRGLPGPVGDYGLPGEPGDG
GINSLGVKGVRGKPGIDGLEGYQGQQGFTGEMGYPGNTGDFGFPGSPGLPGIQGDRGDTV
YGVKGQLGEQGDRGEPGQPGREESRKPENSTVVKGARGPKGMKGMYGDRGRKGEMGAKGP
QGRPGFLGIKGVKGEQGDDGPRGKQGVEGPPGPAGEKGEKGAPGFAGLPGPDGDDGESGE
EGNRGAPGKQGAEGEPGQYIPELDEIIAGNIGIQGELGPPGESGETGTPGLPGKVGFIGP
PGPPGPPGISGLAGEKGSSIKGEQGDDGLAGPTGPQGPSGLPGLPGIMGAKGFPGVTITG
PPGPDGNPGLPGLSGPPGDRGDPGPPGEKGFPGKGIRIRGPMGERGLPGTPGISGPDGWP
GFFGPKGAKGIRGDDCGVCAPGLPGQKGERGESGLDGYPGAPGFPGLPGPRGFKGIQGKR
GPQGPAGLEGDSGRSGIAGVQGPKGEHGRIYFPPDENLFSPPGDIGEKGLPGIEGIRGLR
GPPGSIGDTGVPGPKGDKGEHGPPGLSGKDGLPGWDGIPGEKGEDASIPIEFLRGDPGFP
GEIGIKGIQGDMGNKGEPGDSAQFSEDVRGDKGYKGPRGASGEPGFKGFQGHPGDEGLPG
LPGEPGSPGLSLQGSLGLKGYPGMPGDQGLRGPSGSPGSQGPEGFPGRVGNKGERGDPGS
NLTYGEIGERGWYGPKGDIGDPGPQGLPGRTGGDGSKGIKGGKGAPGYEGLPGLQGAKGQ
RGDSIQGDRGFPGIPGQPGIPGRIGDVGIRGPDGSSGFDGIKGLKGEIGFIGRRGDDGDL
GPQGYQGMHGIQGQPGAPGEKGDVGESGDPGPRGWPGFDGIDGAIGPKGEMGDAGVPGLS
GETGPPGLKGITGDFGLEGLAGVPGENSFSGPQGDLGEPGFMGEVGPPGLAGFDGRPGLP
GEPGVSTDGFKGLPGQKGEPGFDGYNGGPGLKGEIGDMGPDGLKGERGEQGFPGRPGAPG
ISGRHGAKGERGPIGPSGFDGLKGKSGLEGDPGIMGRPGMPGDMGDRGHPGLPGTPGQKG
HVGEPGLPSYAFAAKGEFGDPGHDGFPGVKGQSGESGYIGLPGRKGPIGDRGYPGAVGFP
GLPGFPGLPGDQGPRGAPGLPGEFAEPGEPGRAGLDGMPGIPGRPGQKGAPGEYGPNGPK
GISGDIGYSLRGSKGIVGEPGPRGFVGFPGAPGLEGLPGFPGASGPKGFRGDPGITMGAA
KGQPGEPGWPGLNGRPGLKGMKGDSGLPGFNGLPGPKGERGETGIPGLPGLPGPEGPQGP
KGDVGINPFPPFPRQGLPGDIGVPGLPGFPGLQGMMGEPGKDGLPGRQGETGMIGIPGLQ
GPDGKDGPPGYQGPPGTTGRQGQPGFRGAPGIPAPSAIGPRDRGFYFARHSQTEMIPVCP
RNTVKIWEGFSLLHTMGNGRAYAQDLGAAGSCIKKFSTMPFLFCNLNNVCDYANRNDYSY
WLSTTEPMPMMMTPIPAPEVGRYISRCSVCEAPTRVIAIHSQSMAIPECPGGWEEIWVGY
SFLMHRDAGADGGGQSLVSPGSCLEEFRVRPFIECRGLGTCNYFATATSYWLATIRDEEM
FRKPLQQTLKADYTSRVSRCTVCLRRRVTEVLKPFTSNNERAPNNWGAVPPAPNRNVPDY
ENRIPPNRGRYSHHRRVPYQYRRRSRVRGNKPWERSTDSPDNL
NT seq
5532 nt
NT seq
+upstream
nt +downstream
nt
atgcggcccagggccgcggcgacgtcaaaaatcatcggcgacgcgagccgcggcatctcg
cggccggtcccgttcgtcctgcgaatcacctgcgtccttgccctactggtgcacgccgcc
acgtggataccgatcgccgaggctgtgatttgcaaggactcgtacaaatgtgattgtaag
ggaataaaagggcatcagggatttcctgggatacctgggccccaaggaacagaaggactt
ccaggtgaaatcggacccgatggaccccccggacccaaaggtgaaaaaggagcaggagga
gaatttggagctaccggagaaaagggctaccgaggcgatgacggtatacaaggatttgcg
ggagccccaggactttccggtaatcctggcgtacccggtgtggtgggtccagatggattg
gacggatgtaacggaactgacggtcgcgctggtgcaccgggtatacccggagttttcggg
ccccgtggtctaccaggacctgtaggcgattatggcttaccgggagagcctggtgatgga
ggtataaattcgctcggcgttaaaggagttcgcgggaaacctggtatcgatggactggag
ggttatcaaggacaacagggattcaccggcgagatgggttatccaggaaatacgggcgac
tttggtttcccgggttcccctggcttaccaggtatacaaggtgaccgcggtgacactgtg
tacggtgtgaagggtcaacttggcgaacagggagacagaggagaacctggacaaccgggt
agagaagaaagtaggaaaccggaaaattcgacggtcgtgaaaggagcgcggggaccaaag
ggtatgaagggcatgtatggtgatcgaggtcgcaagggagagatgggcgctaagggtccg
cagggccgaccaggtttcttgggtattaagggtgtgaaaggggaacaaggtgatgatgga
ccaagaggtaaacagggtgttgagggccctccaggcccagctggtgagaaaggagaaaaa
ggagctccaggatttgctggactacctggtccggatggagatgatggagaatcaggagaa
gaaggaaatcgtggtgcacctggaaaacaaggagctgagggtgaacctggacagtacatt
ccagaacttgatgagattatcgccggaaatatcgggattcaaggagaacttggtcctcct
ggtgaatcaggtgaaacaggaacaccgggtctgcccggaaaggttggcttcataggaccg
ccaggaccgccaggaccgccgggtatctctggtctggcaggagagaaaggttcctccata
aaaggagaacaaggagatgatggcttagcaggtcctacgggacctcaaggaccttccgga
ttacccggtttacccggcattatgggggccaaaggattcccgggagtaacaataactgga
ccaccggggccagatggtaatccaggtcttccaggattgtcaggcccacctggcgatcgc
ggtgatcctggtcctccaggagagaaaggttttcctggaaaaggaataagaattcgtggg
ccaatgggagaacggggtctacccggaacacctggtatttctggtcctgatggttggcct
ggtttttttggccctaagggtgccaaaggtattcgaggagatgactgcggcgtatgtgcc
ccaggtttacccggtcagaaaggggaacgtggagaatctggtttggatggatatcctgga
gctccgggattccctggtctacccggaccgcgaggattcaaaggaatacaaggaaagcga
ggtccgcaaggaccggcgggacttgagggtgatagtgggagatctggtattgcgggagtt
caaggacctaaaggagaacatggaagaatatacttcccgccggatgagaacctctttagt
ccgccaggtgacattggcgagaaaggcttacctggcatcgagggaatcagaggtttgcga
ggaccaccaggatctatcggtgacacgggtgtaccgggaccgaaaggagacaagggtgaa
catggtcctcccggattatcgggaaaagacggtttgccgggatgggatggaattcctggt
gaaaaaggtgaagatgcttcgataccaattgagtttttacgtggagatccaggatttcca
ggcgaaataggaatcaaaggaattcaaggagatatgggtaacaaaggagaacctggtgat
tccgcgcaattctcagaagatgtcagaggtgacaagggttataaaggtcccagaggagct
tccggtgaacctggattcaaaggtttccaaggacatcccggcgacgaaggtctaccaggt
ttacctggtgagcccggttccccaggactttcacttcaaggttctctcggtttgaaagga
tatcctggaatgccaggagaccaggggttaaggggcccatcaggttcacctggatcacag
ggaccagaaggttttccgggtcgcgtcggcaacaaaggtgaacgaggagatccaggctcg
aatttaacatacggcgaaattggagaacgcggatggtacggtccgaagggtgacattggt
gatcctgggccacaaggattgccaggtcgaacgggaggtgatggctcaaagggtatcaaa
ggtggtaagggtgcacctggttacgaaggattgcctggacttcaaggtgccaagggtcaa
cgtggagatagtatacaaggtgaccgtggattcccaggaatacctggtcaacctggaata
cccggaagaatcggagatgtcggtatccgcggccctgacggttcttccggttttgatgga
ataaagggtttgaaaggagaaatcggttttattggacgacgtggtgatgacggcgacctg
ggacctcaaggatatcaaggaatgcatggtatacaaggtcaaccaggtgctccaggtgaa
aagggagatgtcggcgaaagcggtgatccaggaccacgcggttggcccggtttcgacggt
atagatggagcaatcggtcctaaaggagagatgggagacgccggagtccctggtctatca
ggagagacaggaccacctggattgaagggtatcacgggtgattttggtctcgaaggatta
gcgggagttcctggcgaaaactccttcagcggtcctcaaggtgacttgggtgaacctggt
tttatgggagaagttggaccacccggtctagctggattcgacggacggccaggtttaccg
ggagaaccaggagtatctactgacggtttcaaaggtttgccaggacagaaaggtgaacct
ggatttgatggatacaatggtggtccgggcctaaagggagaaattggtgacatgggtcct
gatggattaaaaggcgaacgaggagaacaaggcttcccagggagaccaggcgctcctgga
atatccggtagacacggtgcgaaaggtgaaagaggtccgatcggaccatctggatttgat
ggtttgaaaggaaaatccggtcttgaaggtgatccgggtataatgggcagaccaggaatg
ccgggtgatatgggtgacagggggcacccaggacttccaggtactcctggacagaaaggt
catgtaggtgaacctggtttaccatcttatgcgttcgcggcaaagggtgaatttggtgat
cctggtcacgatggtttcccgggtgtaaaaggacaatcaggtgaatcaggatatattggc
ttaccgggtcgtaagggtccaattggagacagaggatatccgggtgccgtcggttttcca
ggattacccggttttcctggactgccgggtgatcaaggaccacgcggagctccaggatta
cctggtgaattcgctgaacccggtgagcctggtcgcgctggtctcgatggtatgcctggt
atcccaggacgtccaggacaaaaaggagctcctggtgaatatggtccaaacggacctaaa
ggaatctctggcgacataggttacagccttcgtggttctaaaggaatagttggagagcca
ggtccgcgaggattcgttggtttcccgggtgcaccaggtttagaaggattgccgggcttt
cctggagcatcaggaccgaaaggtttccgcggagatccaggaataactatgggcgctgcc
aaaggacaacctggcgaacccggatggcctggattaaatggacgacctggactgaaggga
atgaaaggtgattctggtcttcctggcttcaatggattaccaggaccgaaaggagaaaga
ggagaaaccggtatacctggcctacctggtctgcctggtcctgaaggaccacagggaccg
aaaggagatgttggcataaatcctttcccgccgttcccgagacaaggacttcccggtgat
ataggagtaccaggattaccaggattccctggattacaaggaatgatgggtgaacctggt
aaggatggcttgccgggaagacagggtgagacgggaatgattggaattcctgggctgcaa
ggaccagatggtaaagatggacctcctggatatcaaggacctccaggaacaacaggacga
caaggacaaccaggtttccgtggcgcacctggaatacctgcgccgagtgcaattggtccg
agagacagaggattctactttgctcgtcactcacaaactgaaatgataccggtctgtcca
aggaacaccgtaaagatatgggaaggattttcgctattgcacactatgggtaatggacga
gcctacgcacaggaccttggcgctgctggcagctgcatcaagaagttctccactatgccc
ttcctattctgcaatttgaacaatgtgtgcgattacgccaatcgtaacgactatagttat
tggctcagcacaaccgagcctatgccgatgatgatgacaccaataccagcaccggaagtc
ggtagatacatatcgagatgttctgtgtgcgaagcaccaactagggtaatagctatccat
agtcaatccatggcaatacctgaatgtccgggtggctgggaggaaatctgggttggatac
agtttcctcatgcacagagatgcaggcgcggacggcggcggccagtccctggtctcgccc
ggatcctgcttagaggagttccgcgtcagaccatttattgagtgccgtggcctcggcact
tgtaactatttcgccacggcaacgtcgtactggttggcgactatccgcgacgaggagatg
ttccgcaaaccactgcagcagacactcaaagctgattacacgtcccgggtcagccgctgt
accgtatgccttcgccgacgggtcacagaggtcctgaaacctttcacgtctaataacgag
cgagctcccaataattggggcgctgttccgccggcacctaaccgcaatgtgcctgattac
gagaacaggataccacctaaccggggaagatattcccatcacagacgtgtaccctatcag
taccgtagaagaagtcgcgtacgcggtaataagccctgggaacgatcgacggattcaccc
gacaatctgtag
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