Solenopsis invicta (red fire ant): 105197228
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Entry
105197228 CDS
T03916
Name
(RefSeq) collagen alpha-1(IV) chain
KO
K06237
collagen type IV alpha
Organism
soc
Solenopsis invicta (red fire ant)
Pathway
soc04382
Cornified envelope formation
soc04512
ECM-receptor interaction
soc04518
Integrin signaling
soc04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
soc00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
105197228
04518 Integrin signaling
105197228
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
105197228
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
105197228
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
soc04147
]
105197228
00536 Glycosaminoglycan binding proteins [BR:
soc00536
]
105197228
Exosome [BR:
soc04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
105197228
Glycosaminoglycan binding proteins [BR:
soc00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
105197228
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
105197228
NCBI-ProteinID:
XP_011161822
LinkDB
All DBs
Position
3:complement(25688064..25713311)
Genome browser
AA seq
1969 aa
AA seq
DB search
MTRLGLRFVASAVCLAGIVTGQLNHTSWANPPPVVPLERGDIGRPTNSSDDDYGGPGWNY
LDRGFITDNEGYEDAERRNSSYYSRTGYSPDERTRQWNLYRNRSDPHGQFSSGRSPYDRA
PQGYDRYPDSGGASGSGTDENRPGGYPDGHGDYDTYSGAGESERGGSSYNYGQGGSGDSY
GSYGGSRGADSYDRGSGSVYSRGRGSGGPVYSGGRGSDDGRGRGYGGHGAPGDDENYPSN
YLVVPMPGAPRNCTGSGCCVPKCFAEKGSRGPPGLIGPQGPKGQRGFPGAEGLLGPKGEK
GDPGPQGPHGAKGDRGKMGMPGFPGINGIPGVQGSPGSPGLPGRDGCNGTDGERGRDGLP
GEPGPRGIRGPSGPKGEKGQPAYAGSFPVGQKGEPGMDGVRGPPGPPGFQGERGLPGPKG
ERGPYGSPGIPGQKGEKGNMGLGFEGLKGDKGQKGEAGPPGSTAPIMPFQGTSEVTGPPG
EQGYRGDKGEMGPEGQKGEPGFIGDHGIPGGIGMKGEKGLPGAPGIRGRDGFSGPPGPPG
RKGDRGIDGLEGLSGRPGKKGEPGRDGPMGVPGLRGPPGPPGGGKGRPGPPGPQGPRGFP
GPTGPRGSDGFPGDPGPRGPIGLQGGPGLPGIPGPEGLPGEKGSKGEPGLTGFPGGPGPR
GFDGPPGAVGPRGLPGDKGFSIMGPKGMDGTPGLDGEKGQKGERGYAGVRGRPGDSLDGI
PGAPGAPGAPGEAGAPGRDGVPGLPGEMGEKGDIGGRCIDCLPGLRGAKGDRGMDGIPGL
TGPRGPPGERGFPGESGLDGLPGAIGPPGLAGKDGIPGAPGPQGEPGTPATVTRNMLKLE
KGEKGARGEPGRQGPPGPEGPAGEKGRPGFEGFPGLKGTPGDRGFPGQDGVPGRPGTPGR
KGEKGLSIKGEPGEPGRPGFSGQKGEPGFYGLKGEPGQCPPLDLMKGFKGDRGLTGDKGE
PGPPGFDGLPGDKGLQGFSGPPGAPGPIGAPGPVGPRGLPGPRGDKGNMGPMGFPGEPGR
EGPRGFSGAPAPKGEKGEPGISVKGSPGLQGPPGERGEKGLPGPPGKEGLPGYQGLPGFV
GEKGDIGAPGINGLPGAPGGKGDTGPIGPPGPPGVAGIPGADGIKGEPGLPGEPGRAGLP
GFPGAKGDRGEPGIDGPKGYPGRRGSPGPPGRPGVDGISGLKGERGDKGSPGFPGLPGME
GKPGRPGVSGLKGDQGPSGTPGLPGLIGYEGVKGNTGPPGPPGRKGEPGEVSEKGQKGEP
GMPGIRGPPGYPGRDGIDGTKGEAGTPGFGRDGLPGEKGESGIPGRSGIPGPQGQKGDTG
VRGFPGIKGDFGPPGIPGEPGPPGIDGLPGEVGDVGPVGSPGFPGLDGEIGPPGRPGLAG
NKGDRGPSGLAGFPGPPGYIGEKGDRGPPGPTVQVKGEKGEPGIHGLSGSRGEKGDQGLA
GIPGYDGEKGDRGVPGLEGSPGPHGAPGPKGELGPPGIPGAPGVTVKGEKGLPGLMGKHG
RDGFPGRAGEKGEPGLPGLPGPKGDAGPYGPVGPQGEKGDQGPPGLTGAPGRDGTPGLEG
VPGLPGERGSKGDRGPPGEYGAPGLKGESGHPGPSGLDGPPGEKGDRGWDGVNGLPGPLG
EKGDRGYPGPEGLMGSVGYEGQKGEKGEDCLEPPIGPKGDRGYPGPAGPSGPPGEKGLPG
PPGFPGLDGIKGAQGYIGPPGPVGLPGLPGPVGVPGLPGLQGPVGAPGPVGEPGAPCETT
PDYLTGILLVKHSQSQSLPVCEPGHIKLWEGYSLLYTDGDERAHSQDLGYAGSCVRKFST
IPFLFCDVNNVCHYASRNDRSYWLSTNSPIPMMPVEETAIEEYISRCVVCEVPANVIAIH
SQSISIPECPAGWTGLWIGYSFVMHTGAGAQGGGQSLSSPGSCLEDFRATPFIECNGAKG
HCHYYSNQYSFWMVTIEESQQFRSPEKQTLKAGNLRSRISRCQVCIKNT
NT seq
5910 nt
NT seq
+upstream
nt +downstream
nt
atgacccggttgggattgcgattcgtcgcatccgcagtttgcctggccgggattgttact
gggcaattaaatcacacatcatgggcgaatccaccaccggtcgtgccgctggaacgaggt
gatatcgggaggcctacaaacagtagcgatgacgattatggcggtccgggatggaattat
ttagacagagggtttatcacggacaacgaaggatacgaggatgcggaaaggcggaacagc
agttattatagtagaacaggttatagccctgatgaaaggacgcggcagtggaacctctac
agaaacaggagcgatcctcacggtcaattttcctcgggccgatctccctatgatcgagca
ccgcagggctacgacaggtatcctgacagtggcggcgcatcaggttccggaactgacgaa
aatcgaccaggcggttatcccgatggtcacggagattacgatacgtacagcggtgccggt
gaaagtgaacgaggaggaagttcttataattacggtcaaggaggttctggcgattcgtac
ggcagttacggaggaagtcgtggcgcggattcctatgatcgtggaagcggaagcgtttac
agtcgcggtcgtggtagtggtggacccgtttacagcggtggccgaggaagcgatgacggt
cgtgggcgcggttatggcggtcacggtgctcccggagatgacgaaaattatccgagcaat
tacctagtggtaccgatgccaggagcaccgcgaaactgcaccgggtcaggttgctgcgtg
cccaaatgtttcgccgaaaaaggatcgcggggaccaccaggattaattggaccacaagga
cctaagggacaacgaggatttccaggagcagaaggacttctaggacctaaaggtgagaag
ggagatcctggtccgcaaggtccacatggtgcaaaaggtgacagaggaaaaatgggtatg
cctggtttccctggaataaacggtattcctggagtacaaggatctccgggttctccaggc
ttgcctggtcgtgatggttgcaacggaacggatggagaacgtgggcgtgatggtttacca
ggagaaccaggacctcgtggtatacgaggtccgtcgggacctaaaggagaaaagggtcag
ccagcatatgctggctctttcccagttggtcagaagggtgaacctggtatggacggtgta
agagggccgcccggtccccccggttttcaaggagagcgcggtttacctggtccaaagggt
gaacgaggtccctacggttctcctggcataccgggtcagaaaggagaaaaaggaaatatg
ggtcttggatttgaaggattaaagggagacaaaggtcagaagggtgaagcaggacctccc
ggttcaaccgcgcccatcatgccgttccagggtacttcggaagtgacaggtccgcccgga
gaacagggttacagaggagataaaggtgaaatgggaccggaaggacaaaaaggagaacca
ggattcataggtgaccatggtatacctggaggaataggtatgaaaggagaaaagggtcta
ccaggagcaccgggcattcgtggtagagatggtttctctggacctcctggacctcccgga
cgaaagggtgatcgaggtattgacggattagaaggactttctggacgacccggcaaaaaa
ggagaacccggtcgagatggaccaatgggtgttccgggtttgcgaggacctcctggtcca
ccagggggtggtaaaggaagaccgggaccaccaggtccgcaaggaccacgtggttttcca
ggacctaccggaccgcgaggatcagatggttttccaggagacccaggaccaagaggaccc
ataggtttacaaggaggtcctggattgcctggaattccaggtccagaaggtttgccagga
gaaaaaggtagcaagggtgaacctggtttgaccgggttccctggaggtccagggccacgt
ggatttgatggaccaccaggagcggtgggaccacgaggactgccaggagacaaaggattt
tcaataatgggaccgaaaggaatggatgggacgcctggtctggatggggagaagggacag
aagggcgaacggggttacgcgggtgttcgaggtcgaccgggagactctctagatggtatt
ccaggagcaccaggtgcacccggcgcgcctggagaagctggagcaccaggacgagatggc
gtacctggtcttcctggagagatgggagagaaaggagatattggcggtcgttgtatagat
tgtttaccgggattgcgaggcgctaaaggagatcgtggtatggatggtatacccggactt
actggtcctcgaggaccacccggagaacgcggttttcccggcgaatctggattggatggc
ttgccaggcgcaatcggacctccaggactggcgggaaaagatggtatacccggtgctcca
ggacctcaaggagaacctggcacgccggcaacagtaacaaggaacatgctcaaactggaa
aaaggtgaaaaaggagcacgaggagagcctggccgacaaggtccgccgggaccagaagga
cctgcgggagaaaagggtagacctgggttcgaaggtttcccaggacttaaaggaacgcca
ggagatcgtggtttccctggacaggatggtgtaccaggaagaccgggtacacctggacgc
aagggagagaaaggattaagtataaaaggtgaaccaggagaaccagggcgaccaggattt
tcagggcagaaaggagaacctggtttctacgggcttaagggtgaacctggtcaatgcccg
ccacttgaccttatgaaaggcttcaaaggtgatcgaggtttaactggcgacaaaggagaa
ccaggaccacctggtttcgatggattacccggtgataaaggattgcaaggtttctcgggt
ccacctggcgcacctggtccaatcggtgctcctggacctgtaggtccaagaggtttacct
ggcccgcgtggtgataagggcaacatgggtcctatgggtttcccaggagaacctggtcga
gaaggacctagaggtttctcgggtgctccggctccaaagggtgaaaagggagaaccagga
atatcagttaaaggcagtcctggcctccagggtcctccaggtgaaaggggagagaaaggt
cttcctggaccaccaggaaaagaaggtttacccggttatcagggattaccagggtttgtt
ggtgagaagggagacatcggcgcaccgggaataaatggtttaccaggagcacctggtggg
aaaggagatacaggtccgattggtccacctggtcctccaggtgttgctggtattccagga
gcggatggaatcaaaggtgaaccaggattaccaggagaaccaggtagagcaggtctccca
ggattcccaggagcaaaaggtgatcgcggtgaaccgggtatagatggaccaaaaggatat
cctggcagacgaggatcgcctggtcctccaggaagacctggagttgatggtatatcaggt
ttaaagggtgaacggggtgacaaaggttcaccaggattccccggattaccgggtatggaa
ggaaagcccggtcgtcctggtgtatccggattgaaaggagatcaaggaccatctggtacg
cctggtttgccagggctcatcggttatgaaggagttaagggtaatactggtccaccaggt
ccaccgggaaggaaaggagaaccgggagaagtttcggaaaaaggacagaaaggtgaacca
ggaatgcccggaattcgaggtcctccaggttatccgggacgagacggtattgatggaacg
aaaggtgaagctggaacaccaggttttggtcgtgacggattacctggagaaaagggtgaa
tcgggtataccgggtcgaagtggaataccaggaccccaaggtcaaaaaggtgatactggt
gtacgaggattccctggaataaaaggcgacttcggtccaccgggtatacccggcgaacct
ggtccgcctggtatagatggacttcctggagaagtgggcgacgtcggaccagtgggatca
cctggcttccctgggcttgatggtgaaattggtcctcctggacggcctggactagctggt
aataaaggagatcgcggtccttcaggactagccggatttcctggtcctccaggttatatt
ggagaaaagggagatcgtggacctccaggacctacagttcaggttaaaggtgagaaaggt
gaaccaggtattcatggactttctggctcaagaggagagaaaggagatcaaggtctggct
ggtatacctggttatgatggcgaaaaaggtgaccgaggtgtacctggacttgaaggatct
cctggacctcatggtgctcctggacctaaaggtgaactaggacctcctggtattcctgga
gctcctggagttacggtaaagggcgaaaagggtttgccaggtctaatgggtaagcacggt
agagacggatttccaggacgagccggtgagaaaggtgaaccaggattgcccggtttgcct
ggaccaaagggagacgctggtccatatggaccagttggaccacaaggtgaaaaaggtgat
caaggaccaccgggtctgaccggagcaccaggacgtgacggaactccaggtctcgaaggt
gtaccaggattacctggtgagagaggttcgaagggagatcgaggaccacctggagaatac
ggtgcaccaggattaaagggagaatccggtcatccaggaccaagcggattggacggacct
ccaggagaaaaaggtgacagaggttgggatggtgtaaatggtctacctggaccactcggt
gagaagggtgatagaggatatcctggtccagaagggttaatgggttctgtcggttacgaa
ggtcaaaaaggagaaaagggtgaagactgtctcgagccgccaataggacctaaaggagat
cgcggatatcctggaccggccggaccgtctggtccaccgggagagaaaggacttccgggt
ccgcccggtttccctggcttagatggtattaagggcgcacaaggttacatcggtccacca
ggacctgttggactaccgggattgcctggacctgtcggagtgcctggtctaccgggtcta
caaggtcctgtcggtgcgccaggacctgtcggtgagcccggtgcaccatgcgaaacgaca
cctgactatctcactggtattcttctggtcaagcacagccaaagtcaaagcttgccggtt
tgcgagccaggccacattaaactttgggagggatacagtttgctctacaccgacggtgac
gagagagcgcactctcaagacttaggttatgccggctcgtgtgtaagaaaattctcaaca
atacccttcctgttctgcgacgtcaacaacgtctgccattacgctagtcgcaatgatcgt
tcttactggctgtctaccaatagcccaattcccatgatgcccgtcgaagagacggcgata
gaagaatatatatccaggtgcgtggtgtgcgaagttccggctaatgtgatagcgatacac
agtcaatcgataagcattccagaatgtccggcgggatggaccggtctttggatcggttat
agttttgtaatgcacaccggcgcaggtgcccagggcggcggccagtccctgtcgagtccc
ggctcctgcctggaggacttccgcgccacaccgttcatcgaatgcaacggcgccaaagga
cactgccattactattctaatcagtacagcttctggatggtgaccatagaggagagccag
cagttcaggagccctgagaaacagaccctaaaggcgggcaatcttagatcccgaataagt
cgctgccaagtgtgtataaagaatacgtaa
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integrated database retrieval system
