Solenopsis invicta (red fire ant): 105197450
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Entry
105197450 CDS
T03916
Name
(RefSeq) GATA zinc finger domain-containing protein 10 isoform X1
KO
K14323
protein CASC3
Organism
soc
Solenopsis invicta (red fire ant)
Pathway
soc03013
Nucleocytoplasmic transport
soc03015
mRNA surveillance pathway
soc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
soc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105197450
09122 Translation
03013 Nucleocytoplasmic transport
105197450
03015 mRNA surveillance pathway
105197450
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
soc03019
]
105197450
Messenger RNA biogenesis [BR:
soc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
105197450
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Btz
Motif
Other DBs
NCBI-GeneID:
105197450
NCBI-ProteinID:
XP_011162110
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All DBs
Position
2:15359977..15367738
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AA seq
803 aa
AA seq
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MSDTRRRRKSNQSCGSDDLSDSYEELNATKETQSSEQTDGHQDSECDIYESDSDADSQEG
GEQRESGDGQEEEKPQKKLDDDEDRRNPQYIPKRGTFYEHDDRTTDEVTDNNTEQQTNVK
ETKEKKVWKDKEDRWDHDRYNDEEQAPKRPEELIATYGYDIRNEEGPPRARRRRRYGRGP
NKYTRNWEDEDAYGKTMPSRGNSRRFQKNNEDFPALGNNKNTPSKVEEPVISSAWYSSKN
KTQNKTQNFPPLQSQQDNAKSKPATSSNASTNENKSLDESTNTSWKKDSRHVTQNQSTNG
NTGSSSDVDKLTNIKPSPRENNKRNTQESVSLIASRTRGRGFKPNANNNMVTNRIVENKS
KGRGPGPVTVENRRNNTVQHNEEHQLAHDMKQQLNINDGSQYHQPARHNKGFFTSSNQHR
SNTVPPRMQQQQQQQQQQQQSHQQQTHSQQQTIQQQQQDNSGNRPKRYSSLRQRPTISET
PAQQNYPSQHAQHGYFPPQAGNSRAVLESQGYPQGHFEQSSPVAPAAAPMAGQPVIPLPP
GGQAASYPPPPFLVPPPQFIPPQTAPPSIINYVPGPNGPTFPPNFQGYQGYNPSVQPQGP
PPPQELFQPQGCTYYSPAQQQQQQQQTAPIRRPKAAIPILPPPDNQQSGRGRGRSTQQYQ
NNQSGGGGNGQQTEQEIKSGNAVESDEKPVPGQFDSAQIEQPSPTPSQESQKNLVPDTVR
TVNDVDEKVEMVTNADIHIKIDTLPVKKDNLDDNVSVKELLEATSNEKNTVSHSPTTLAS
VETELGNIESAIPESTIVEKAAA
NT seq
2412 nt
NT seq
+upstream
nt +downstream
nt
atgtcggacacacggcgacgtcgtaaatccaatcagtcatgtggttcggacgatctctcg
gactcgtacgaggagctgaacgcgacgaaggagacccagagtagcgaacagactgatgga
catcaagattcggaatgtgacatttatgaaagcgactctgatgccgattcgcaggaaggt
ggagaacaacgtgagagcggggatgggcaagaagaggaaaaaccgcagaagaaattagac
gacgacgaagaccgacgtaacccacagtacataccgaaacgtggaacgttttacgagcat
gatgatcgtacgaccgacgaagtaactgataataatacagaacagcagacgaatgtaaaa
gaaaccaaggaaaagaaggtgtggaaggataaagaagataggtgggaccacgaccgatac
aatgacgaagaacaagctccaaagagacctgaagaattgatagcgacgtatggttatgat
attagaaatgaagaaggaccacctagagctagaaggagaagaagatacggtcgtggacca
aacaaatacacgaggaattgggaggatgaagatgcttatggaaagactatgcctagtaga
ggaaacagtagacgttttcagaaaaataatgaagattttcctgctcttggtaataataag
aacactccgagcaaagtagaagaacctgtgatttcgtcggcttggtacagcagcaagaat
aaaacacagaataaaacccaaaacttcccgccgcttcagtcacagcaggataatgcaaaa
tctaagcctgctacttcctccaatgcatccacaaacgaaaataaatcattggatgaatcc
accaatacatcttggaaaaaggacagtagacatgttactcagaatcaaagtacaaatgga
aacactggttctagcagtgacgtggataaattaactaatattaagccatcaccaagagag
aataacaaaaggaatacccaagagtctgtaagcttgatcgccagtagaacgcgtggaaga
ggtttcaagcccaatgctaataacaacatggtcactaacagaatagttgagaataaatcg
aagggacgtggtccaggtccagttacagtagagaatagaagaaataatactgtacagcat
aatgaagagcatcaacttgctcacgatatgaaacagcaacttaatattaatgatggtagt
caatatcatcagcctgcacgacacaacaaaggtttttttacatcctccaaccaacacaga
tcaaacacagtaccacctagaatgcagcagcaacagcagcagcagcaacaacagcaacaa
tcacatcagcaacaaacacactcacaacaacagacaatacaacagcaacaacaggataat
tctggaaacagacctaaacggtattccagtcttcgtcaacgacctactatttcggaaact
cccgcacaacagaattatccatctcaacatgctcaacatgggtattttccacctcaagct
ggaaattcaagagccgttctagaatctcaaggttatccccaaggtcattttgagcagtct
tctccagtcgctccagctgcagcacccatggcagggcaacctgttattcctttaccacca
ggtggacaagctgctagttatccgccaccaccattcttagtaccaccaccgcagtttata
ccacctcaaacggcacctcctagtataattaattatgttcctggtccaaatggcccgacg
tttccaccaaactttcaaggttatcaaggatataatccttccgtgcagcctcagggtcca
ccgccacctcaagaattattccaaccgcaagggtgtacttactacagtcccgcgcagcag
cagcagcagcagcaacaaacagctcctatacggcgaccgaaagcggcgatacctattctt
ccaccacctgataatcagcagagcggcagaggaagaggtagaagcactcaacagtatcag
aataatcaatctggtggtggtggtaatgggcaacagactgaacaagaaatcaagagtgga
aacgcggtagaaagtgatgagaaacctgtgccgggacaattcgacagtgcacaaatcgaa
cagccgagcccaacgccgagtcaggaatcccagaagaatctggttccggatacagtcaga
acagtgaatgatgtagatgaaaaggtagagatggtcaccaatgctgatattcatataaag
atcgacacgttacctgttaaaaaagataatctggacgataacgttagtgttaaagaacta
ttagaagcaacttctaacgaaaagaacacggtttcgcacagtccaacgacattggctagc
gtcgagactgaattaggtaatatcgaatctgcaattcccgaaagtactatcgtcgagaaa
gctgcagcctaa
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