Solenopsis invicta (red fire ant): 105197465
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Entry
105197465 CDS
T03916
Name
(RefSeq) probable ATP-dependent RNA helicase DDX43
KO
K17043
ATP-dependent RNA helicase DDX43 [EC:
5.6.2.7
]
Organism
soc
Solenopsis invicta (red fire ant)
Brite
KEGG Orthology (KO) [BR:
soc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
soc03041
]
105197465
Enzymes [BR:
soc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
105197465
Spliceosome [BR:
soc03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
105197465
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
KH_1
MOEP19
ResIII
KH-I_KHDC4-BBP
KH_2
KH_KhpA-B
KH_5
CMS1
Motif
Other DBs
NCBI-GeneID:
105197465
NCBI-ProteinID:
XP_011162144
LinkDB
All DBs
Position
2:complement(15521622..15526839)
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AA seq
684 aa
AA seq
DB search
MGDWEDNRPSSRRYERGFDQRRDNRRERDTHFYKRSNTSSGDNWNNDSSTYNNSYRREYV
RGSNDNSTNGLVMYVDTNNVGKIVGRGGSKIKALESESNARIKIDRQQEENGQTAVTLIG
TDDEQQRAKSLIEELLIDRSSGFDRNSRFDRNSGFNRNSGFNRSSETDKNMQENVESTQG
TGDQPEQKEIDWVNFDWSKANQEYENHQKQKWAALPPIIKNFYKEDPAVTHMSASKVAHI
RKINNNIEVKHVFENEGGTDEELKIPNPVETFEQAFQAYPDILTEIRKQNFEKPSPIQCQ
AWPILLSGRDLIGIAQTGTGKTLAFLLPALIHIDGQVTPRDERPGPNVLVMAPTRELALQ
IEKEVAKYSYRGIKAVCVYGGGSRKAQVATVSSGVQIVIATPGRLNDLVQANILDVSAVT
YLILDEADRMLDMGFEPQIRKTLLGVRPDRQTVMTSATWPQGVRRLAQSYMKNPLQVFVG
SLDLAAVHSVTQKIYMVDQDEKTEYMHQFFQEMGPHDKAIVFFGKKSKVDDISSDLALSN
IECQSIHGDRDQADREQALEDLKSGTVQILLATDVASRGIDIEDVTHVLNYDFPRDIEEY
VHRVGRTGRAGRTGESITFMTRQDWHHAKALIDILEEANQEVPEEVYKMAERYDAWKQKK
DAEQSSLRGNRYGNSGRRERYRRT
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
atgggtgactgggaagataacagaccgtcgtcaaggaggtacgaacgaggtttcgatcaa
agaagggataatagaagggaaagagacactcacttttataaacgctctaacacatcatct
ggggataattggaataatgattcaagtacatataataattcgtatcgtcgcgaatatgtt
agggggagtaatgacaatagtacaaatggacttgttatgtacgttgataccaataatgtt
ggaaaaattgttgggagaggtggcagcaagattaaagctctagagagtgaaagcaatgcc
aggatcaagattgacagacagcaagaagaaaatggacagactgctgtgacattaattggt
acagatgatgaacagcaacgagctaagagcttaatagaagagttattgattgatagaagt
agtggatttgacagaaatagtagatttgacagaaatagtggatttaacagaaatagtgga
tttaacagaagtagtgaaactgataaaaatatgcaggaaaatgtagaatctacacaagga
acaggagatcaacctgagcaaaaagaaattgattgggtcaattttgattggtccaaggct
aatcaagaatatgaaaaccatcagaagcagaagtgggcagctttgcctcctattataaaa
aatttttataaggaagatccagccgttacccatatgtcggcatcgaaagtagctcacatc
aggaagatcaacaataatatagaagttaaacatgttttcgagaacgaagggggcactgac
gaagagctgaaaataccaaatcctgttgaaacctttgaacaagcttttcaagcatatcca
gatatcctcacagaaatacgaaagcaaaacttcgaaaaaccaagtcctatacagtgccag
gcatggcctattctactgagtggtcgagatctcattgggattgctcaaactgggacagga
aaaactcttgcttttttattgcctgctttgatccatatcgatggacaagtaactcctcgc
gacgagcgtcctggaccaaatgttcttgttatggcaccgacgagagaattggcattgcag
attgaaaaagaagtagcaaagtactcttaccgtggtattaaagcggtctgcgtgtacggt
ggcggaagtcgcaaagcacaagtagctacggtgtcaagtggcgtgcaaatagtaattgca
actcccggaagattaaacgatctggttcaagcaaatatattagatgtatcggctgtaaca
tatcttatacttgacgaagcagatcgtatgttggacatgggttttgaaccgcaaattcgt
aagactctcctaggtgtacgaccagataggcaaaccgttatgacaagtgctacatggcct
cagggtgtaagacgcttagcccaatcgtatatgaagaatccgcttcaagtatttgtcgga
tctcttgacttagcagctgtccactctgtgacacagaaaatttatatggttgatcaagac
gagaaaacggaatatatgcaccagttcttccaagaaatgggccctcatgataaggcgata
gtatttttcggtaaaaagtctaaggtagacgatatctctagcgatctggctttatcgaat
atcgaatgccagagcattcacggtgatagagatcaagcagatagggaacaggcgttagaa
gatttgaagagtggaactgttcaaatccttctcgcgactgacgtggctagtcgaggaatt
gatattgaagatgttacacatgtattgaactatgacttcccacgagatatagaagaatac
gttcacagagttggccgtaccggacgcgcaggtcgaacaggcgaaagtattacttttatg
acacgacaggattggcatcatgcgaaagcgcttatagatattcttgaagaggctaatcaa
gaagtacctgaagaagtgtacaaaatggctgaaagatatgatgcatggaaacagaaaaaa
gacgcagaacaatcgagtctaagaggcaacagatatggtaacagcggtagacgcgaacgt
tatcgtagaacttaa
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