Solenopsis invicta (red fire ant): 105198315
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Entry
105198315 CDS
T03916
Name
(RefSeq) uncharacterized protein LOC105198315
KO
K03679
exosome complex component RRP4
Organism
soc
Solenopsis invicta (red fire ant)
Pathway
soc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
soc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105198315
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
soc03019
]
105198315
Messenger RNA biogenesis [BR:
soc03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
105198315
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
105198315
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRP4_S1
Isochorismatase
ECR1_N
EF-hand_1
EF-hand_7
EF-hand_6
KH_6
EF-hand_5
EF-hand_8
EH
ECR1_N_2
RRP40_S1
Motif
Other DBs
NCBI-GeneID:
105198315
NCBI-ProteinID:
XP_025991776
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Position
12:complement(18130385..18135372)
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AA seq
585 aa
AA seq
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MAQYPPINARLAVNRVDFNLITNDGVQPRLYTPGEEISSQPDFLRGHGTYVDEDKTLRAS
VAGILEKVNKLISIRPLKARYNGEIGDLIVGRITEVQQKRWKVDVNAKLDAVLLLSSVNL
PGGELRRRSAEDEQTMRRYLQEGDLICAEVQSIFADGSLSLHARVLKYGKLSQGIMLKVP
PMLIQRKKTHYHTLESGAILILGYNGYVWIGANIQNVDKSEGGFTEDLSKIPVENRNNLE
TGSRQVARDMDACFNAFDKDCDGFLSISEFDLICRALFRNDRGKIYGLEEDQLREVYSIF
DLKGDGVIDREEFEVCWNRWIKICTRPKSAFLIVDVQNDFITGSLNIKHCAAQHDGTEVI
EPIVIEPINRLLETVPFDSVFYSLDWHPVDHVSFIDNLHLREVDISSNISKEAARVYDTV
TFRGPPLQKQRLWPRHCVQDSWGAELHKDLKILDNAIKIYKGTNPEVDSYSVFWDNKKLT
ETTLSSQLQEKGATDIYICGLAYDVCVGATAVDALTSGYRTILIDDCSRGVDLVDIEKTK
ATVIASNGVIVNSSQIKAMVEGRDRRPELGYKLALEIKQKMNLGE
NT seq
1758 nt
NT seq
+upstream
nt +downstream
nt
atggctcagtatccgcccattaacgcacgtctggcggtaaacagggtagacttcaatcta
ataacgaacgacggcgtccagccgcgactctacactcccggcgaggagatatcaagtcag
ccggatttcttaagaggtcatggaacctatgtcgatgaggataaaacattgcgtgcatca
gtcgctggtatcctggagaaggtgaacaaacttatatcgatcaggccattaaaagctcgt
tacaatggggaaattggtgatcttatcgtaggaaggataacagaagtacagcaaaagcgt
tggaaggttgatgtaaatgccaagcttgatgcagttctattattgtctagtgttaatttg
cctggtggtgaattgagaagaagatccgccgaagatgagcagacgatgcgtaggtatttg
caggagggagacctgatatgcgcggaggtgcaatcgatcttcgccgatggctcgctttct
ctacacgcgcgagtgttgaaatatggcaaactgtcgcaggggataatgttgaaggtaccg
ccgatgttgatccaacgcaagaaaacgcattatcatactctagaaagcggcgccattcta
atacttggctacaacggctatgtgtggatcggcgcaaatattcaaaacgtcgataaatcc
gagggtggtttcacggaggatctgtcgaagattccagtggagaaccgcaacaacttggaa
acaggtagtcggcaagtagcgagagacatggacgcatgtttcaatgcctttgataaagac
tgcgacggattcctgtcgatctcggaattcgatcttatatgccgcgcgttgtttcgaaat
gaccgcggcaaaatttacggcctcgaggaagatcaattgcgtgaggtgtactcgatcttt
gatcttaaaggcgatggcgtgattgacagagaagaattcgaggtctgctggaatcgatgg
atcaaaatatgtacgcgtcccaaaagcgccttcctaattgtggatgtgcaaaatgacttt
ataacaggttccttgaacataaaacactgcgccgcgcaacacgacggtacggaagtaatc
gaaccaatagtaatcgaaccaattaatcgattgctggaaactgtgccgtttgactcggtg
ttttattccttggactggcatcccgtggatcacgtatcctttattgataatttgcacttg
agggaggtagacatcagcagcaatatttcaaaggaagcggcacgagtatacgacactgta
acgttccgaggtccaccgttgcagaagcaacgtttgtggccgcgtcactgcgtgcaggat
tcttggggtgccgagcttcacaaagatctgaagatcctcgacaacgcgattaagatttac
aagggcacaaacccagaggtcgactcctactcggtcttctgggacaacaagaagctcacc
gagaccacgctatcgtcgcagctgcaggaaaaaggcgccactgatatttacatctgcgga
ctggcttacgacgtttgcgtgggtgctactgcagtggatgcgctcacaagcggttaccgc
actatattgatcgacgattgcagtcgcggcgtagatctcgtcgacattgaaaaaaccaaa
gccaccgtaatagctagcaacggcgtgatagtaaactccagccagatcaaagctatggtg
gagggaagagaccgacgaccggaactcggctacaaacttgcattggaaattaaacagaaa
atgaatctcggtgaataa
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