Solenopsis invicta (red fire ant): 105199620
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Entry
105199620 CDS
T03916
Name
(RefSeq) ATP-dependent RNA helicase WM6
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
soc
Solenopsis invicta (red fire ant)
Pathway
soc03013
Nucleocytoplasmic transport
soc03015
mRNA surveillance pathway
soc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
soc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105199620
09122 Translation
03013 Nucleocytoplasmic transport
105199620
03015 mRNA surveillance pathway
105199620
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
soc03019
]
105199620
03041 Spliceosome [BR:
soc03041
]
105199620
Enzymes [BR:
soc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
105199620
Messenger RNA biogenesis [BR:
soc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
105199620
Spliceosome [BR:
soc03041
]
Complex C
Other components
EJC/TREX
105199620
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
105199620
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
105199620
NCBI-ProteinID:
XP_011165090
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All DBs
Position
8:complement(4032337..4038275)
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AA seq
424 aa
AA seq
DB search
MADNDDLLDYEDEEQTEQVVDGSGDIPAKKEVKGTYVSIHSSGFRDFLLKPEILRAIVDC
GFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEWTENQVYVLVMCHTR
ELAFQISKEYERFSKYMQHVKVGVFFGGLPIQKDEEVLKTVCPHIVVGTPGRILALVRNK
KLNLKHLKHFILDECDKMLELLDMRRDVQEIFRSTPHSKQVMMFSATLSKDIRPVCKKFM
QDPMEVYVDDEAKLTLNGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVQRCMAL
AQLLTEQNFPAIGIHRGMTQEERLSRYQQFKDFQKRILVATNLFGRGMDIERVNIVFNYD
MPEDSDTYLHRVARAGRFGTKGLAITLVSDESDAKILNDVQERFDVNITELPDEIDLASY
IEGR
NT seq
1275 nt
NT seq
+upstream
nt +downstream
nt
atggcagataacgatgatcttttggattatgaggatgaagagcagactgagcaggtagtc
gacggaagcggagatattcctgctaagaaggaagtcaagggcacatatgtgtctatccac
agcagtggattcagagatttccttctcaagccagaaattctacgcgctattgtcgactgt
ggctttgaacatccatctgaagtacaacatgaatgtattcctcaagctgttcttggcatg
gatatcttgtgtcaggcaaaatcgggtatgggtaaaacagcagtttttgtattagctact
cttcaacaacttgaatggacggagaaccaagtctatgtcctagtgatgtgtcatactcga
gaattggcttttcaaatcagtaaggaatacgagaggtttagcaagtacatgcaacacgta
aaggttggtgtgttcttcggaggtttacctatccagaaagacgaagaggtcctgaaaact
gtgtgtcctcatattgttgtcggcactcccggtcgtatcctcgctcttgtacgaaacaaa
aaactgaatctgaaacatttgaaacattttatacttgatgaatgcgataagatgcttgag
ttattagatatgcgccgggatgtgcaggaaatattcagaagcacaccgcacagcaaacaa
gtcatgatgtttagtgccacgctgtccaaggatatacgtcctgtctgcaaaaagttcatg
caagatcccatggaggtctatgtcgatgacgaggcgaagctcactttgaacggtctccag
cagcattatgttaaattgaaggagaatgagaagaacaagaagttatttgaactacttgat
gttcttgagtttaaccaggttgtgatatttgtgaagtctgtacaaagatgtatggcttta
gcccaactcctgacggagcaaaattttcctgcgattgggattcaccggggtatgacgcaa
gaagagcgattatctcgatatcagcaattcaaagatttccaaaagcgtatattggtggcg
acaaacctgttcggacgcggcatggatatagaacgggtgaacattgtattcaactatgat
atgccagaggattctgacacatacctgcacagagtagcacgcgctggtcgttttggtaca
aagggtcttgccattacattagtgagcgatgaaagtgacgccaagatattgaatgatgtt
caagagaggtttgacgtaaatattacagaattaccggacgaaatcgatctcgcttcatac
attgaaggacgatga
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