Solenopsis invicta (red fire ant): 105200100
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Entry
105200100 CDS
T03916
Name
(RefSeq) symplekin
KO
K06100
symplekin
Organism
soc
Solenopsis invicta (red fire ant)
Pathway
soc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
soc00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
105200100
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
soc03021
]
105200100
03019 Messenger RNA biogenesis [BR:
soc03019
]
105200100
Transcription machinery [BR:
soc03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
105200100
Messenger RNA biogenesis [BR:
soc03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
105200100
U7-dependent histone pre-mRNA processing factors
105200100
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
SecD-TM1
Motif
Other DBs
NCBI-GeneID:
105200100
NCBI-ProteinID:
XP_011165784
UniProt:
E9IAM5
LinkDB
All DBs
Position
7:complement(2139835..2146459)
Genome browser
AA seq
1110 aa
AA seq
DB search
MDPRLHRRTETEKAPGDLIVEWLNEASIGLSEETKVANICKVQELLLNKEPHLLEHYLDE
ILQFSIDRNAEVRKTVTGFIEESGIKFPEVIPRTVQVLLRLASDEASVVAKRALRASGRI
LRAALKWIASAAIVTTDMELAWTQLSALKIQIINMIDSDNDGIRTQAVKFLEGVILIQTY
PDPDSPKKPDDFSLEDIPLTLKIARRRKLEEEANHVMDLLIKFHGSPHVSSVNLMTCMGS
LALIAKMRPQFMSNVIQALQRLQHDLPPTLSDSQVTSVQKQLKITLLGLMKHPACIEYAS
TIAKQLTQLGAKEQEIIKAYPKPEDVRRMKKRQQELAAATAAKRVKIEVNLIDEAEAAPS
PVPPPKLPELIELSESFIAERLSVEIATDLVMDSMAWVPDTMTTIFQREYQPTATTDINI
QRQTIAKLLATQIKQTKAKKNKKDKEEDAVMEDLIKNPTISVAEAKRERKREKDREKEKE
AKASLEAHEKSIAKARNRLKALKLVEVTKPLPKETKERMLLMAVNRILLAEKTAVLGGVA
AVRSKILTTLAATFNPYIKEAVLRYITDDMRNRLDLALGWLYEEYALLQGFQRRTTLCTK
PQEAPHQAYNFLLCTLVSAIDLIQGKDRDTLLSRLYLEAPLITEDAVEALKMVSSDETRG
LVPLQLLKEMVVRRPTKQLVFLNVLLCHTGHENNTIREAAIQLVCQLYSRPDLSKLIEEY
AVLYLGFLRLHNPPEIVFGQDRGRPQIESQWTESTTRACLGLYLSLLTEHQDLIHELARV
YTSMGADVKRIVLRLVEGPVRSLGMGSPQLLALVESCPKGSETLVTRIIHILTEKSAPSA
ELVARVRELYQTRVSDVRFLIPVLNGLTKKEVIAALPKLIKLNPIVVKEVFNRLLGTHNN
DSGVPHTSPITPAELLIALHNIDSSKAELKTVIKATSLCFAEKQAYTQETVAVVMQHLME
MTPLPTLLMRTVIQSLALYPRLSGFVMNILQRLILKQVWKQPKVWEGFVKCCERTQPQSF
AVILQLPPAQLAEALRMASNLRAPLLAHVEAFAENQKAHIPQSIMDVIQGKVPCDMHDEF
DIAPPGDYSNDQKPDTMEIDLSEPAPPGLD
NT seq
3333 nt
NT seq
+upstream
nt +downstream
nt
atggatccacgtttgcatagaagaaccgagacggaaaaggcaccgggcgatttgatcgtt
gaatggttaaatgaggcctctattggcctctctgaagaaactaaggttgcaaacatatgt
aaagtgcaggagcttttgttgaacaaggaacctcatttgttagagcattatttagatgaa
attctgcaattctcgatagacagaaatgctgaagtcagaaagactgttacaggatttatc
gaagaatctggaataaagtttccagaggtaatacctcgtacagttcaagtactccttaga
ttagcgtccgatgaagcatcagttgtagctaaacgagcgcttagagccagtggtagaatt
ctccgagctgctctcaagtggatcgccagtgctgctattgttacgacggatatggaatta
gcttggacacagctaagtgcccttaaaattcaaatcataaacatgattgacagtgataat
gatggaataagaacacaggcagtaaagttccttgagggtgtgattttaatacagacttat
ccagatcccgacagtccaaagaagcctgatgatttctctcttgaagacattccgctcaca
ttgaaaatagctcgtcgacgaaagctggaggaggaagcgaatcacgttatggatttgttg
atcaaatttcatggctctccacacgtcagcagcgtcaatttaatgacgtgtatgggatct
ttggcgttaatcgctaaaatgagaccacagtttatgtcaaatgtaattcaagcattacaa
aggttacaacatgatctaccgccaacactgtccgattctcaagtaaccagtgtacaaaaa
caattgaaaattacgcttcttggactgatgaaacatcctgcttgtatagaatatgcttcg
accatagctaaacagttgactcagcttggagcaaaagaacaagaaattattaaagcctat
ccaaaaccagaagacgtccgtcggatgaaaaagcgtcaacaggaattagcggctgccact
gctgcgaaacgagtaaaaattgaagtgaatttaatagacgaggcagaagcggcaccaagt
cccgttcccccacctaaattaccagaattaattgaactttctgaaagttttattgctgag
agactcagtgtcgaaatcgcaacggatttagtaatggatagtatggcatgggttccggat
actatgacgacaatttttcaaagagaatatcaacccacagcgactactgatattaatata
caacgtcaaacgattgctaaacttctagcaacacaaatcaaacagactaaagcgaaaaag
aataaaaaagacaaggaagaagatgccgtaatggaagatttaattaagaatcccactatt
agtgtagccgaggcaaagcgggagcgtaaacgtgaaaaggatcgggaaaaagagaaagaa
gcgaaagcctcattagaagctcatgagaaatctattgcaaaagccaggaatcgtttaaaa
gcattaaaattagttgaagtgacaaaaccacttccaaaagaaactaaagaacgaatgtta
ctgatggcagttaataggatattacttgcagaaaaaactgcagtccttggtggcgtagct
gctgtaagatctaaaattttaactacgctagcagcgacttttaatccttatattaaagaa
gctgtattacgttatattactgatgacatgcgaaatagattagatttagcgttaggttgg
ctatatgaagaatatgcattgctgcagggatttcagagacggactacattatgtacgaag
ccacaggaagctccacatcaggcatacaactttttattatgcactttagtttcagctatt
gatttgattcagggtaaagatcgtgatactttattatccagactttatctggaagcacca
ttaataacagaagatgctgtagaggctttaaaaatggtatcgtctgacgaaactagaggt
cttgtaccattgcaacttctaaaagaaatggtagtgcgtagaccaaccaaacaactggta
tttttaaatgtcttattgtgccacactggacatgaaaacaatacaatacgggaagctgca
atacaattagtctgtcaattgtatagccgaccagatttaagtaaactgatcgaggaatat
gcagttttatatttaggctttttacgtcttcataacccaccggaaattgtttttggacaa
gatagaggcagaccgcaaatcgagagccaatggactgaatcaactacacgtgcttgtcta
ggactgtatctttctcttctcactgaacatcaagatctcattcacgaattagccagagta
tatacgtcaatgggagcagatgtgaaacgtattgtattaagactggtagaaggaccagtg
agatctttgggtatgggaagtccacaactacttgcacttgttgaaagctgtccaaaagga
tctgaaactttggtcacgaggatcatacatattcttacagaaaaatctgctccaagcgca
gagttagtagccagggtacgtgagttatatcagactagagtttccgatgtcagattttta
atacctgtcctgaatgggctcacaaagaaagaggtgattgctgcattaccaaaattaata
aaattaaatcctattgtcgtgaaagaggtgttcaacagattactcgggacacataataac
gacagcggggtaccacatacatcgcctattacacctgcggaattattgatagctctacat
aatatagattcaagcaaggccgaattaaagactgtcattaaagcaacatctctttgtttc
gctgagaaacaagcgtacacgcaggaaacagtcgctgttgtgatgcaacatcttatggag
atgacacctttaccaacattattgatgcgcacagttatacaaagtctggccctttatccc
aggctaagtggatttgtcatgaacatacttcaacgtctgattctgaaacaagtgtggaaa
cagccgaaagtgtgggaaggtttcgtcaagtgctgcgaacgcacacagccacaaagtttc
gccgttatcttgcaattgccaccggcacagttagcagaggcacttaggatggcgagcaat
ttacgtgctcccttattagcccatgttgaagcttttgccgagaatcagaaagcacacatt
ccgcaatcaataatggatgtcatacagggtaaagtgccctgtgacatgcacgatgagttt
gatattgcaccacctggtgattattcgaatgatcaaaaaccagatacaatggaaattgat
ctttcggaaccagcccctcccggtttagattag
DBGET
integrated database retrieval system
