Solenopsis invicta (red fire ant): 105200340
Help
Entry
105200340 CDS
T03916
Name
(RefSeq) eukaryotic initiation factor 4A-III
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
soc
Solenopsis invicta (red fire ant)
Pathway
soc03013
Nucleocytoplasmic transport
soc03015
mRNA surveillance pathway
soc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
soc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105200340
09122 Translation
03013 Nucleocytoplasmic transport
105200340
03015 mRNA surveillance pathway
105200340
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
soc03019
]
105200340
03041 Spliceosome [BR:
soc03041
]
105200340
03009 Ribosome biogenesis [BR:
soc03009
]
105200340
03012 Translation factors [BR:
soc03012
]
105200340
Enzymes [BR:
soc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
105200340
Messenger RNA biogenesis [BR:
soc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
105200340
mRNA cycle factors
Stress granule specific factors
105200340
Spliceosome [BR:
soc03041
]
Complex C
Other components
EJC/TREX
105200340
Ribosome biogenesis [BR:
soc03009
]
Eukaryotic type
90S particles
Helicases
105200340
Translation factors [BR:
soc03012
]
Eukaryotic type
Initiation factors
eIF-4
105200340
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Cas3-like_C_2
AAA_22
UvrD-helicase
AAA_30
TniB
Utp25_C
NAT10_TcmA_helicase
Motif
Other DBs
NCBI-GeneID:
105200340
NCBI-ProteinID:
XP_011166134
LinkDB
All DBs
Position
4:27960940..27962999
Genome browser
AA seq
402 aa
AA seq
DB search
MAEKSRRVAQTEDLSNVEFETSEDVEVIPTFDNMGLRDELLRGIYAYGFEKPSAIQQRSI
KPIMKGRDVIAQAQSGTGKTATFSIAILQSLDTQVRETQVLVLSPTRELATQIQKVILAL
GDFMNVQCHACIGGTNLGEDIRKLDYGQHVVSGTPGRVFDMIKRRVLRTRAIKMLVLDES
DEMLNKGFKEQIYDVYRYLPPATQVVLVSATLPHEILEMTSKFMTDPIRILVKRDELTLE
GIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVCSMHG
DMPQKERDNIMKEFRSGQSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSG
RFGRKGVSINFVKTDDIRILRDIEQYYSTQIDEMPMNVADLI
NT seq
1209 nt
NT seq
+upstream
nt +downstream
nt
atggcggagaaatcacgtcgtgtagcacaaacggaagatttatcaaacgtcgagtttgaa
accagcgaagatgtcgaggttattcccacctttgacaacatgggtctccgcgatgagctg
ttacgcggaatctatgcgtacggttttgaaaaaccgtcagccattcagcaacgatctatt
aaacctatcatgaaaggcagagatgtaatagctcaggcacagtctggtacaggaaaaacc
gctactttctcaattgcgatattacaatcattggatacacaagtacgagaaacgcaggtt
ctggttttatccccaactcgagaacttgccactcaaattcagaaggttattcttgcattg
ggagatttcatgaatgtacaatgtcatgcctgcattggtggtacaaatcttggagaagac
atcagaaaactcgattatggccagcatgttgtatctggcacacctggtagagtattcgat
atgattaagaggcgagtactcagaactagagctattaaaatgttagtactagacgaatct
gatgaaatgttgaacaaaggtttcaaggaacaaatatatgatgtatatcggtatttacca
ccggcgacacaggttgttttggtttcggctactttaccccatgaaattctcgaaatgact
agtaaatttatgacagatcccatccgcattcttgtcaaacgtgatgagttgacattagaa
ggaatcaaacaattcttcgtcgctgtagaacgagaagagtggaaatttgacacactctgt
gatttgtatgacacgttgacaataacgcaagcagttatcttttgtaatactaaacgtaaa
gtagactggttgacggaaaaaatgcgagaggccaattttacagtatgttctatgcatgga
gacatgccacaaaaagaacgagataacataatgaaagagtttcgatctggtcagagtcgc
gtgttgattacaacggatgtctgggctagaggaatcgatgttcagcaagtgtcactcgta
attaattacgatctacctaacaatcgtgaattgtatattcacagaataggtcgatcggga
cgtttcggccgtaaaggtgtgtcgataaattttgtgaaaaccgatgacataagaattctc
cgagatatcgagcaatattactctacgcaaatagacgagatgccgatgaacgtggctgat
ttgatataa
DBGET
integrated database retrieval system
