Solenopsis invicta (red fire ant): 105201398
Help
Entry
105201398 CDS
T03916
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 5
KO
K14397
cleavage and polyadenylation specificity factor subunit 5
Organism
soc
Solenopsis invicta (red fire ant)
Pathway
soc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
soc00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
105201398
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
soc03019
]
105201398
Messenger RNA biogenesis [BR:
soc03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
105201398
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NUDIX_2
Icarapin_C
Motif
Other DBs
NCBI-GeneID:
105201398
NCBI-ProteinID:
XP_011167698
LinkDB
All DBs
Position
11:complement(11156826..11161565)
Genome browser
AA seq
228 aa
AA seq
DB search
MAMATSQVKGSGWPRRASNSSFEGKVVQNQSVTINRTVNLYPLTNYTFGTKEPLFEKDPS
VPARFQRMRDEFDKIGMRRSVEGVLLVHEHGLPHVLLLQLGTTFFKLPGGELNTGEDEVE
GLKRLLTETFGRQDGVKQEWVIEDTIGNWWRPNFEPPQYPYVPPHITKPKEHKRLFLVQL
QEKALFAVPKNYKLVAAPLFELYDNSQGYGPIISSLPQSLCRFNFIYM
NT seq
687 nt
NT seq
+upstream
nt +downstream
nt
atggcgatggcgacgagccaagtgaagggcagtggctggccacggagggcgagcaacagt
tcgttcgaggggaaggtggtgcaaaatcaatcggtcaccatcaacaggaccgtgaattta
tatcctttgacaaactatacatttggaacaaaagagccactcttcgagaaagatccgtca
gtaccggcaaggtttcagcgcatgagagatgaattcgacaagatcggcatgcggagaagc
gtagaaggtgtcttgctggtacacgaacacggactgccacatgttcttcttctgcaactt
ggcacaacattcttcaaattacctggcggagaactcaatacaggagaagatgaggtagag
ggcctaaaacggctccttacagagactttcggacggcaggatggggtgaaacaggaatgg
gttatagaagacacaattggaaactggtggcgtccgaactttgaaccacctcagtatcca
tacgtgccaccacacatcacaaaaccaaaggagcacaagagactatttctcgtgcaacta
caagaaaaagctctcttcgctgtaccgaagaattacaagttagtcgcagcaccattattt
gaattgtatgataactcgcaaggttacggtcccataatctcgtctttgccacaatctctt
tgcaggtttaattttatctatatgtga
DBGET
integrated database retrieval system
