Solenopsis invicta (red fire ant): 105201442
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Entry
105201442 CDS
T03916
Name
(RefSeq) collagen alpha chain CG42342 isoform X1
Organism
soc
Solenopsis invicta (red fire ant)
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Paralog
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
105201442
NCBI-ProteinID:
XP_039304335
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Position
4:21955207..22113270
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AA seq
730 aa
AA seq
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MKNNPAAESWPPSDPGTGKGSSSPSCLEASMPRKFRDGALRAAGTTVAGLNWAMCALCLA
SFAVSGVLFYRELGLESRIASLEARCLRVQEPEYHLPMDALVQRVKADILEQMRQQQPQR
IEPGAVFRHKRDISECNCPPGPPGEPGPPGKRGKKGKKGDPGEPGAPGVAGTPGKNGFPG
PIGLDGPKGDPGRPGDKGQKGELGSPGFDVLSAVKVNAQGLGLKRSVTTLRGGTLGYAEI
VALKDLQEKGVNISAQNIIPLKGEPGEPGPPGPPGPSGAEGLPGHEGRQGIPGEVGAPGE
KGPPGPIGPIGPTGAPGLPGPKGDRGDKGDRGFTTTLKGEQFPTGVFEGPPGPPGPPGSP
GEKGELGPTGPPGLPGEKGARGKQGKRDFKVGSGLALARGAPGLPGAKGEPGERGYRGDK
GAKGDAGSSGPKGEAGAQGLSGLNGTDGEPGIQGPPGLPGISGPKGEKGDYGDIGPPGLM
GPPGLPGPPGYPGLKGEKGEKGESKYKKLRRRQGDGTFEMNAGEVIMGPPGPPGPAGTPG
LQGPPGIKGDRGHDGAKGDPGEKGGKGDPGPMGLPGPMGLRGESGKPGDSGKPGAMGSPG
LDGMKGAQGEPGTKGERGDPGLPGTDGIPGAEGPKGEKGAKGESGPPGKRGRKGDKGNKG
DQGVPGLDAPCPLGPDGLPLPGCGWRPPQQDITSTSTPANEGPEPAETDYEEPEDEYEDY
TDPNGNLAEQ
NT seq
2193 nt
NT seq
+upstream
nt +downstream
nt
atgaagaacaacccggcggccgagtcctggccgccgtcggacccggggacgggtaaggga
tcgtcgtcgccgtcctgcctggaggcgtcgatgccgcggaagtttcgcgatggggccctt
cgcgcggcggggaccaccgtcgccggcctcaattgggcgatgtgcgccctctgcctggcc
agcttcgccgtgtccggcgtgctcttctaccgcgagctcggcctcgagtccaggatcgcg
agtttggaggcgcgctgcctgcgcgtccaggagccggagtatcatctgccgatggacgct
ctggtgcagagggtcaaggcggatatactggagcagatgcggcagcagcagccgcaacgg
attgagcccggcgcggtcttcaggcacaaacgcgacatctccgagtgcaattgtcctcca
ggtccacccggtgagccgggtccgcccggaaagaggggcaagaaagggaagaagggcgat
cccggggagcccggtgcgccgggtgtggccgggacgccgggcaagaacggttttccggga
cccatcggcttggacgggcccaaaggtgatccgggccgaccaggcgacaaagggcagaag
ggcgagctgggcagccccggattcgacgtcttgtccgcagtgaaggtcaatgcacaggga
ttggggttaaagaggtcggtgacgacgctccgcggcgggacgctcggctacgcggaaatc
gtcgccctcaaggatcttcaggagaaaggggttaatatctcagcgcagaacatcatacca
ctgaaaggagagccgggtgaacccgggccgccgggaccacccggtccgtcaggagccgag
ggtcttcccggacacgagggcagacaggggattccgggcgaggttggcgcaccaggggag
aagggcccgcccgggccgatcggacccatcggcccgacgggcgcgccaggacttccaggt
cccaagggtgacaggggtgataaaggcgatcggggcttcacgacgaccttaaagggtgag
cagttcccaactggagtattcgaaggcccacctggtccaccaggaccacctgggtccccg
ggcgagaagggagaactgggcccgacaggaccgcccggcctgcccggcgagaagggtgct
cggggaaagcaagggaagagggatttcaaggttgggagcggtttggcattggcgaggggt
gcccccggcctgccgggtgcgaagggtgagcccggcgaacggggttaccggggcgataag
ggcgccaagggagacgcgggttcatcagggcccaagggagaggcgggagcgcagggcttg
tcggggctcaacggaaccgacggcgaacctggtatccaaggaccccccggattaccggga
atatccggacctaaaggtgaaaagggcgattacggcgacattggtccgcccggccttatg
ggacctccgggtctacccggcccaccgggatatcctgggctgaaaggcgaaaagggagaa
aaaggcgaatcgaagtacaaaaagctcaggcgaagacagggagacggcacgttcgagatg
aacgccggggaagtgataatgggcccgcccggacccccaggacccgctggtactcccgga
ctgcagggcccacccgggatcaagggtgacagaggacacgacggcgccaagggcgatcct
ggagaaaagggtggcaaaggggatcctggtccgatgggactgcccggccccatgggactg
aggggagagtccggaaaacccggggattccgggaaacctggcgccatgggatcaccagga
ttagacggcatgaagggcgcgcagggcgaaccaggaacgaagggagaaaggggagatccg
ggattgcctggtaccgacgggattcccggcgcggagggaccgaagggagagaaaggtgcc
aaaggcgaatctgggccgccgggtaaacgcggcagaaaaggcgacaagggcaacaaggga
gatcaaggtgttccaggattggatgccccgtgtccgctgggaccggacggactcccctta
ccaggctgcggctggagaccaccgcagcaggatatcacgagcacgtccacgccggcgaac
gagggtcccgagcccgcggagacggattacgaggagccggaggacgagtacgaggactat
acggacccgaacgggaacctagccgagcaataa
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