Solenopsis invicta (red fire ant): 105201475
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Entry
105201475 CDS
T03916
Name
(RefSeq) small subunit processome component 20 homolog
KO
K14772
U3 small nucleolar RNA-associated protein 20
Organism
soc
Solenopsis invicta (red fire ant)
Brite
KEGG Orthology (KO) [BR:
soc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
soc03009
]
105201475
Ribosome biogenesis [BR:
soc03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
105201475
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UTP20_N
UTP20
UTP20_C
TPR_Trm732_C
DAGK_prokar
Motif
Other DBs
NCBI-GeneID:
105201475
NCBI-ProteinID:
XP_025993612
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All DBs
Position
11:complement(11135868..11145667)
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AA seq
2742 aa
AA seq
DB search
MKNKPTRHKEANVFRFKPFSERVTEIDVDVFHRVAHRNEDDAEEIETYFHETLQKWNFLN
LTEGYTAFRKQVRDIVTLPQLLHKKQHVIDTLMLYLKKRDPLFLQPILELIIAVARDLQK
EFYDYFPEFLSEIICLLQTKDAEQIEYAFTTLAYLFKFLWKYLTKNIRTVVPLLLPLLAD
TQPDYVNRFAAESFAFVGRKIRDKDSFLKLVLHALEDRNENAKKNGVSGCGKLLFEIVSG
TPGQFHSCGEQMLLLYFNALQDESIDQELTYEVLREIITCILQNIHPQKCDIMWNVILKV
IDAFVEKSKQSLESSERKRALILFLRLVHIIINYKNGRFLTDTVSLTKRFVVIMDTLSED
NNVLQEVINVSVAILMASNVKLMQENSSQLLLKIMAVNDVELLYSAVENLISYSSFEVLA
LPHVLRRSMSNKFDGKTLLLLAKIILAKASPCLNGITLNKWRKYILDIRNIGIEIIDYFL
LELKTLSTDTVSLDALRILIILPHLKPLREEFKNMLKDGLLFLHQKILEYNADDTADVNK
TAFVFLLTLESLIHMSEPSDLHEFLVKSDMKIIDLVEKHQDNKYILNAIDLCLTYFATSQ
HHADYINSKSFDKLNDNVVKKFSSPYGNVRLIVAHLYSLFSNVEDLKRPSMEIGDGKNAM
ELVYLAERESATIQNYRSKLLHLQALGFQNYAVANLNPKYYEFPLRCLIGNLYVNFSLLW
QPVTAIIASYGNKECSQFWPIFLTELTSNNVPETERKSSFDCQVVSSLEMLIERHDDKPD
FENHKILLWKCMTHFSHYAETKNRDLTGLFIDFVNANFFRSNSDEGKCCDVEKRKELINA
DNDTDDDENESDEERDESVKIARADAMKRNHKVKLLLAQMEIFDKVQNPKMLHREAEMHQ
IYLDLISSRNADIQRAALNCLFAYKYKYLLPYKESLYNLINEKNFKNELARFKLDRESNM
IEEEHRENLMPFIMRIIYAKMIMKIGIRTGGKAGGFARRKIILRFLGGAQEDEMIVFVKM
AFRPFKSYVSLEVDETFDLRKYAGNIIDTVDLNNVMPPKRMQSAVNLLALMIEQFGGKMS
TKLLPRLLRILICILAEVDGILRKSGEVYPGYLSTIKNVRTSCIGILARFFTHFEDYDWK
RHEIDAVYHVAIFPLLQKLPADGIHSPTALLKLFMAWGQNPRYYPLFAKHQEDNESITPL
PYIMRLLSNPKTHQSVINAILEIIEKMLTLQDYGRSNENAMQVDEPFLPLTPILTNVLEV
EEKVLSTGVNYGSVILLPHVPRILEFIKDKLKRSNKSMNKTELIILSRISEFVTDAETCN
TVLKLIIPVLIKKAMYGSNEVAVMGLLTTVTNLIKIVNEPEIHLRSIAPLIGFVSDVPAR
KILLQLYRTIAERSVEERREAMIRDCDVLAALNAWDHRWIDQPDFQKRLDAFNLISDMAG
RNAITLEFGVTVIHNCFYFLKTESDLAMRDCSGQCLKLVGTKLAREHQSNVLNRRYLMDD
TILPLMRKGITSKNEAIRFQSIAFLGHLALECADVHPVLRDLSLLANRADPEVDFFENMQ
HLQLYRRARALLKFCALAKTLQKPFNPKTLTQFILPLCSSYLCNEAFIHKNSLIDAAIES
VGVVCKLLPWHHYEIILKHYLGKLRSSTEFQKQVVRIVVIILDSFHYDLSKYKPAEKVAH
VEATSTETEDDSAFITEKEETNDVTGEDENLENTEQGDEEKLEEALNDENVEGVEEIIEK
DKEVIKENLPIMERQTLLSQYGAKKVIFSISNDLLRQLHRSIMARTRQESSHKINKKKIA
SETEEDDLLRVPIALALVKLLQKMPENLLDANLPGIFMKLCTFLKSRMESVRRATRETLQ
KIMITLGPKYLHHLLKELNTLLTRGFQVHVLVYTVQAVLLALKPYFQKCDINNNLQSILS
VCKVDLFGLTAEEKEVAGIVKNVSEAKSTKSFDIFHILAEFITESCLLDLILPLKEMLIK
THSHKTIHKIVECFRNVTLGLADNVYIPLEQMLIFLYGIISESIPDLMPEKESKKLVEEE
RRRETKALIQQSDYFLIPQEPKNRMGIKATAKTTKHANVHVIIEFGLKLYHILLKRDKIS
GTEYKRYLEPFVPLLSDCLKSHHIKLCTVALQCLNWMLKMDLASMHSSISDICTSMFNIL
HKYAAAGLSKGDNFDLVMATFKCMSVLVRDVKYFSIDADQLKILILYAEQDLHDSDKHAT
AFTLLKAIIHRKMITAEMYTVMEKVAMLSITSELEHVKLQSRSVFYSYLMGYPLGKHLDK
HIYFYLTQLSYEMQPGRLSALEMIHSIVTGFPLKTLTKRAEIIFVMTGARLIDDDDPTCR
KLCAKCIEEMLMRIPFNVRNKLFDKWPLQWLSDSKIRYRTLAAQLCGIFVTVEKNKFDSR
LPQVAPLLLKQFHVKFSQKDSKKERMEDHHLIQVLQLLLKIAKHTSFFTNETYKDSIDSF
AEYSQSLLAHPHLWIRLAAVKLIGFILAALDVDKVVELLNNSDSDPVHEGYMYSKPIDTL
KSLILDLVAQLYPDMTFEQLADEVVRNLIFIAKMLKSITRPAKNDDQDNGNKMNDSNNLS
FHWLIRRLRKAVNIEITQAPKSTSVRTAMFKFVAGVVKTVPMEYLNAVLFNIMSPLVREM
TITEETNTELSRLAKEVATMIKKSIGNEEYVKLLNQVQQKLDIKKAERKKVRAQQFVTDP
DLAAKRKMAKQQKKKEAKKRKLDTIKGSKRVKKRKKAELDDM
NT seq
8229 nt
NT seq
+upstream
nt +downstream
nt
atgaagaacaagccaacccggcacaaggaggcgaacgtcttccggttcaagccgttctcc
gagagagtgacggagatcgacgtcgatgtctttcaccgtgtggcacatcggaatgaggat
gacgccgaggaaatcgagacttattttcacgagacgctgcaaaaatggaactttctcaac
ctgacggaaggctataccgccttcaggaagcaagtgcgggacattgtcacgttgccccag
ttgcttcacaagaagcaacatgtaatcgacacgcttatgttgtacctgaagaaacgagat
cccttgttcctgcagccgattctagagttgataatagctgtagcaagagatcttcagaaa
gagttttacgattatttcccagaatttctgtctgagataatatgtctgctgcaaacaaaa
gacgccgagcagatagagtatgctttcactactctagcatatttgtttaaatttctttgg
aaatatctgacaaagaacattagaactgtggtacctttgttgctgccactgctggccgac
acgcagccagactatgtaaacaggtttgctgccgaaagttttgcatttgtaggtcgcaag
attagggataaagattcctttttgaaactggtgctgcatgctctggaggatagaaatgaa
aacgctaagaaaaatggggtatcaggttgtggaaagctgttgtttgagattgtatctggt
actccaggacagttccattcttgtggcgagcagatgttgttgctttatttcaatgctctg
caagatgaatctatcgaccaagagctcacctacgaagtactgcgagaaatcataacgtgc
atattgcaaaatatacatccacaaaaatgtgatatcatgtggaacgttatattaaaagta
attgacgcgtttgtcgaaaaatcgaagcagtcgttagaatcatctgagaggaaacgcgct
ttgattctatttctgcgtcttgtacatatcattatcaactataaaaacggaagattctta
accgacactgtatccttaacaaaaagatttgttgtcataatggacacattgagcgaagac
aataatgtcttgcaagaagttatcaacgtgtctgttgctatactcatggcgtccaacgtc
aagctaatgcaagagaactcgagtcagctattgctgaaaattatggcggtaaacgatgtg
gaattattgtactccgctgttgaaaatttaatatcgtattcttcgtttgaagtcttggcg
ttgccccacgtattgcggcgcagcatgtctaacaaattcgatggtaaaacgttacttctg
ttagctaaaataattctcgcaaaagcatcaccttgtctcaatggcataactttgaacaaa
tggagaaaatatattttagatatacggaatatcggaattgagattattgattatttcttg
ttggaattgaaaacgttgtctactgataccgtttcgctcgacgcattgaggattttgatt
attttaccacatttgaagccgttgcgcgaagaatttaagaacatgttgaaagatggttta
ttatttttgcatcaaaaaatattggaatataatgcggatgatactgcggacgttaataaa
acggctttcgtatttttattaacgctggaatcactgatacacatgtcagagccaagcgat
cttcacgagtttttggtaaaatctgacatgaaaataattgatcttgttgaaaaacaccaa
gataataaatatatcttaaacgcgatagatctctgcttaacgtatttcgctacgtcgcag
catcacgcggactatataaattcaaaatcgtttgataaattgaatgacaatgttgtaaaa
aagttcagttcaccttatggcaatgttcgattgatcgtggcgcatttgtattccttgttt
tctaacgtcgaagatctgaagaggccttcgatggaaattggtgatggaaaaaatgctatg
gagcttgtgtacctggcagaacgcgagtccgcgacgatacaaaattaccgcagcaagttg
ctgcacttgcaagctctaggatttcaaaattacgcggtagctaatttaaatccgaagtat
tacgaatttccgttacgatgcttgattggcaatctgtacgtcaatttttccctgctctgg
cagccggtgactgcgattatagctagttatggcaacaaggaatgctcgcagttctggcca
atatttctgaccgagttaacgtctaacaatgtaccggagactgaacgaaaatcgtcattc
gattgccaagtggtttcgtcgttggaaatgttaatagagagacacgacgacaagcctgat
tttgagaatcacaagattcttctctggaaatgcatgacacatttctcacattacgccgag
acaaaaaatagagacttaaccggattattcatcgatttcgtaaatgcaaattttttccga
tccaattccgacgagggcaagtgttgcgatgtcgaaaagcgtaaagaattaatcaacgct
gacaatgacacggacgatgacgagaacgaaagcgacgaggagcgtgacgagagcgtaaag
atcgcgcgagcggacgcgatgaaaaggaatcacaaggtgaaacttttactcgcccagatg
gagatattcgacaaggtgcaaaatccgaaaatgttacatcgagaagcggagatgcatcag
atctatctggatttgatttcgtcgaggaacgccgacattcagagagctgctctgaattgt
ctcttcgcgtacaaatacaaatatcttttaccgtacaaggagtctttgtacaatttgata
aatgagaagaattttaagaacgagctcgcacgcttcaagttggatcgggagagcaacatg
atagaggaggagcatcgcgaaaatctcatgccgttcataatgagaattatttacgccaaa
atgattatgaagatcggcataaggaccggtgggaaagccggtggattcgcacggaggaag
atcatcctgcgctttctaggcggtgcgcaggaggacgagatgatcgtgttcgtcaaaatg
gcatttagaccgttcaagtcgtacgtatcgctggaagtggacgagacgttcgacttgaga
aagtacgctgggaacatcatcgataccgtcgacctgaataacgtcatgccgcctaaacgt
atgcagagcgccgtgaatctgctggcgttaatgatagaacaatttggtgggaaaatgtcg
acgaagttactgccgcgtttgctcaggatactgatttgcatcttggccgaggtggacggc
attctgcgcaaatcgggggaggtttatccgggatatctatcgacgattaagaacgtgagg
acgagttgtatcggcatactggccagattcttcacgcacttcgaggactacgactggaaa
cggcacgagatagacgcggtctatcatgtcgcgatatttcctttattgcagaaactgcct
gccgacggtatacacagtcctacggccttgctgaagctattcatggcgtggggccagaat
ccacggtattatccgttgtttgctaagcaccaggaggacaacgagtcgatcactcctctt
ccttacatcatgcgactcctgtcgaatcccaagacgcatcaatccgtcatcaatgccatt
ctggagataattgagaagatgttgacgctgcaggactacgggagatccaatgagaatgcg
atgcaggtggacgagccgttcttaccgctaacaccaatacttaccaatgtgctcgaggtg
gaggagaaggtactttcgaccggggtcaactacggctccgttatactcctgccacatgtt
cctcgtattctggagttcatcaaggataaacttaaacgatccaataagagcatgaacaag
accgagttaatcatactgtcgcgaatatctgaattcgtcacggacgccgagacatgcaac
acagtgctgaagctaataatacccgtgttaataaagaaagctatgtatggcagtaacgag
gtggccgttatgggactgctgacgaccgtcacaaacttgataaaaattgtgaatgagccg
gagattcacctgcgttccatcgcgccgttgataggcttcgtgtcggacgtgcccgctcgc
aagattcttctgcagctgtaccgtaccatcgctgagaggtctgtggaggagcgtcgcgag
gcaatgatccgggattgtgacgttctagctgcgcttaacgcgtgggatcacaggtggatc
gatcaaccggactttcagaagagattggacgctttcaacctgatcagcgacatggctggc
agaaacgcgattacactggaatttggcgtaaccgtgatacacaactgcttttactttctg
aaaaccgagtcggatttggcgatgcgagattgctccggccagtgcctgaagctcgttggg
acgaaactggcgagagagcaccagagtaacgtcctgaacaggcgttacctaatggacgac
actatcttaccgcttatgaggaagggcattacgagcaagaacgaggccattcgctttcaa
tcgatagcgtttttgggacacctggccctagaatgcgcggacgtacatcccgttttacga
gacttgtccctactcgccaatcgagccgatcccgaggtcgacttcttcgagaacatgcaa
catctgcaattatataggagagctcgtgccttgttgaagttctgcgcgcttgctaagaca
ttgcagaaaccgtttaatcctaaaacgttgacgcaatttattcttcctctttgctcctcg
tatttgtgcaacgaagctttcattcataagaacagcctcattgacgccgccatcgagagt
gtcggagtagtgtgcaagctgttaccgtggcatcattatgagattatcttgaagcattat
ttaggcaaattaaggagctccacggagttccagaagcaagtcgttagaatagtagtaatt
atattggactccttccattatgatctttcaaaatacaagccagcagagaaagtcgcgcat
gtcgaagctacttcgacagaaaccgaagacgactctgcttttatcactgaaaaggaagaa
actaatgatgtaactggtgaggatgagaaccttgaaaatacggaacaaggagatgaggaa
aaattggaggaagcactaaacgatgagaatgttgaaggtgttgaagagataatagaaaag
gataaggaagtgataaaagaaaatttaccgataatggaaagacaaacgctactttctcaa
tacggcgcaaagaaagtgatattcagtatttcgaacgacttgctgcgtcaactacatcga
tctatcatggcgagaactcggcaggagagtagtcataaaatcaacaagaagaagatcgcc
tctgaaacggaggaggacgatttactgagagttcccattgctctcgcgcttgttaagtta
ttgcaaaaaatgcccgagaatcttctggatgcaaatctgccaggaatttttatgaaattg
tgtacattcctaaagtcacgtatggaatcggttcgacgtgcgactcgcgagacactgcag
aaaattatgataactttaggaccaaagtatcttcatcatcttttgaaagaactaaataca
ttgttaacaagaggcttccaagtacatgttctcgtgtatacagtacaggctgtattactc
gcattgaagccgtatttccagaaatgtgatatcaataataatttacaaagcatcctgtct
gtgtgtaaagtggatttatttggattaaccgcagaagaaaaggaggtagctggtattgtt
aaaaacgtgtcagaggcaaagagtactaagagctttgatattttccatattttagcggaa
tttataacagaatcttgcttattagacttgattctgccgttaaaggaaatgctaataaag
acgcattcgcataaaacgatacataagatcgtggagtgttttcggaacgtaactctggga
ttggcagacaacgtttacataccattggaacaaatgctcatatttctttacggtattatt
tcggaaagcataccagacctcatgccggaaaaggaaagtaaaaaacttgtggaagaggag
cggagaagagaaacgaaagctttgatacagcagtcggattatttcctcataccacaggaa
cccaaaaacaggatgggtattaaagccactgcaaagactaccaagcatgccaacgtccat
gtaataatagaattcggtttgaaactgtatcacatattgctgaaacgagacaaaatctcc
ggcacggaatacaaacgttacctggaaccatttgtaccacttttaagtgattgtttaaaa
tcgcatcatattaagctatgtactgtagcgttacaatgcttaaattggatgcttaagatg
gacctagcttcgatgcattcgtcaatatcagacatttgtacttctatgtttaacattttg
cataaatacgccgctgcgggtttaagcaagggagacaacttcgatctcgtgatggccacg
ttcaaatgcatgtccgtactcgttcgcgacgtaaaatacttcagcatcgatgctgatcag
ctgaagattcttatcttatacgcggagcaagacttacacgacagcgataagcacgctacc
gcatttaccttgctcaaggctataatacatcgaaaaatgattaccgctgaaatgtatacc
gtcatggaaaaagtagcgatgctgagtatcacctcggaattagagcacgttaaattgcaa
tcgcgttctgtgttctactcttatctcatgggttatccgcttggcaagcatttggacaaa
cacatatacttctatcttactcagttgagttacgagatgcaaccgggccgattgagcgca
ctagaaatgattcacagcattgtcacgggatttccgttgaaaacgttaaccaaaagagca
gaaatcatatttgtaatgaccggtgcaagattgatagacgatgacgatccaacctgtcgt
aaactttgtgcgaaatgtatagaagaaatgcttatgcgaataccctttaatgttaggaat
aagctgtttgacaagtggcctcttcagtggctaagtgattctaaaataagataccggacg
ttagcagcacagttatgtggcatattcgtgactgttgaaaaaaacaaattcgattcgcga
ctgcctcaagtcgcgccgttgttattgaagcaatttcacgtaaaattctcgcagaaagat
tcgaagaaagaaagaatggaagatcatcatttgattcaagtgttacaattgctactaaaa
atagcaaaacacacatctttttttacgaatgaaacgtacaaagattccattgattctttt
gccgaatatagccaatcattgttggcgcatccacatttgtggattcgattagcggcagtg
aaattaattggttttattttggctgctcttgacgttgataaagtcgtggaacttttaaat
aattcagatagcgatccagtacatgaaggttacatgtactcgaagcccatcgacacttta
aagagtttaattttagatttagtagctcaactttatccggacatgacatttgagcaatta
gcagacgaggttgtcagaaatctaatctttatcgcaaaaatgttgaaatcgatcacaaga
cctgcgaaaaatgatgaccaagataatggaaataagatgaatgatagtaacaatttatct
tttcactggcttattaggagactgagaaaagctgttaacatagaaataacgcaagctcca
aagtcaacatcagtgagaactgcaatgtttaagtttgttgcgggtgtagtaaaaacagtg
cctatggagtacctgaacgcggtactttttaatatcatgtcgccattggtgcgagagatg
accataacggaagaaacgaacactgaattaagtcgacttgccaaagaagtagctactatg
attaaaaaatccataggaaatgaagaatatgtcaaattactgaatcaagtgcaacaaaag
ttggacattaagaaggcagaaagaaaaaaagttcgcgcgcaacagtttgtgacagatcct
gacctagcagctaaacgtaaaatggctaaacaacaaaagaagaaggaggctaaaaaaaga
aaactggacaccataaaaggaagcaaaagagtaaaaaaacgtaaaaaagcagaactggat
gatatgtaa
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integrated database retrieval system
