Solenopsis invicta (red fire ant): 105201764
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Entry
105201764 CDS
T03916
Name
(RefSeq) cleavage and polyadenylation specificity factor 73
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
soc
Solenopsis invicta (red fire ant)
Pathway
soc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
soc00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
105201764
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
soc03021
]
105201764
03019 Messenger RNA biogenesis [BR:
soc03019
]
105201764
Transcription machinery [BR:
soc03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
105201764
Messenger RNA biogenesis [BR:
soc03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
105201764
U7-dependent histone pre-mRNA processing factors
105201764
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B_6
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
Gp58
Motif
Other DBs
NCBI-GeneID:
105201764
NCBI-ProteinID:
XP_011168248
LinkDB
All DBs
Position
12:15406363..15409080
Genome browser
AA seq
686 aa
AA seq
DB search
MSTRKKNDAQVPAEESDLLSIRPLGAGQEVGRSCIMLEFKGKKIMLDCGIHPGLSGMDAL
PFVDLVEADEIDLLLISHFHLDHCGALPWFLQKTSFKGRCFMTHATKAIYRWLLSDYIKV
SNIATEQMLYTESDLETSMDKIETINFHEEKDVFGIKFWAYNAGHVLGAAMFMIEIAGVK
ILYTGDFSRQEDRHLMAAEIPNIHPDVLITESTYGTHIHEKREDREGRFTNLVHEIVNRG
GRCLIPVFALGRAQELLLILDEYWSQHSELHEIPIYYASSLAKKCMAVYQTYVNAMNDKI
RRQIAINNPFVFKHISNLKGIDHFEDIGPCVVMASPGMMQSGLSRELFESWCTDAKNGVI
IAGYCVEGTLAKTILSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRTLKPPH
VVLVHGEQNEMGRLKAALQREYEDDPSTTMEIHNPRNTVAVELYFRGEKTAKVMGTLAME
TPRPGQKLSGVLVKRNFNYHMLAPCDLSKYTDMSMSQVIQRQSVYFSASLPVLKHLLTQI
AGSLEVVDDKKLRVFKNVDVTIDGKIVTMEWVATPVNDMYADSVLTAILQAEIMEQSPKV
LPAPTKMDRMHFKECLIEMLQEMFGEDSVPKIFKGEKLYVTVDGKKAHIDLLNLEVTSKE
DETFQQIVQTAVTKLHQSLAPPCDVI
NT seq
2061 nt
NT seq
+upstream
nt +downstream
nt
atgtcgacaaggaaaaagaacgacgcgcaagtgccggccgaggaaagcgatctgctctcg
attcggcctctcggcgccggccaggaagtcggcaggtcgtgtatcatgttggaatttaaa
gggaagaaaatcatgctggactgcggtatccatcccggcctttcgggaatggatgccctc
ccattcgtcgatcttgttgaggccgatgagatcgacttgctattgatctcgcattttcac
ctggaccactgtggcgcgctgccctggttcctgcaaaagacgagtttcaaaggccgctgc
ttcatgacgcacgctaccaaagcgatttatcgctggttactgtctgactacatcaaggtg
agcaacatagctaccgagcagatgttgtacacggagtccgatctagagaccagtatggac
aagatagagacgatcaacttccacgaggaaaaggacgtgttcgggatcaagttttgggcg
tataatgctggccacgtgttgggcgctgcgatgttcatgatagagatcgccggcgtgaag
attctgtacacgggagacttcagccggcaggaggacaggcatttgatggccgctgagatc
ccaaatatccatcctgacgtgctgatcacggaatccacatatggcacacatatccatgag
aagagagaggatcgtgagggcagatttacgaatcttgtgcatgagattgtcaatagaggt
ggcagatgcctgattcctgtattcgccctgggaagagcacaagagcttctcctcattcta
gatgagtattggagccagcactcggaattgcacgaaattccgatttattacgcttcctcc
ttggcaaaaaagtgcatggctgtttatcaaacatatgtgaatgctatgaacgacaagatc
cgacgacaaatagccatcaacaatccatttgtattcaagcatatctccaatttgaaaggg
attgatcatttcgaggacattggaccgtgtgtagtaatggcctcgcctggtatgatgcag
agtggcttgtccagagaattatttgaatcttggtgcacagacgcgaaaaatggagtgata
atagccggttattgcgtggagggtacactagccaagaccattctgtcggagccagaggag
attacaactatgtctggtcaaaagctgccgctgaaaatgtccgtcgactatatatcattt
tcagcacacaccgattatcaacaaacgtcggaattcatacgtactctgaaaccaccgcat
gtggtgctggtgcacggcgaacagaacgagatgggtcggttgaaggcggcgttacagcgg
gaatacgaggacgatcccagcaccaccatggagatacacaatccgcggaacacggtcgcg
gtcgaactctactttcggggcgagaagacagccaaggtaatgggcacactggcgatggag
acccccagaccggggcagaagttgtccggcgtgctggtcaagaggaacttcaattatcac
atgctggcaccgtgtgacctgtctaagtatacggacatgagcatgagccaggtcatacag
cggcagagcgtgtacttctccgcgtctctacccgtgctgaagcatctgctgacgcagata
gccggcagcctcgaggtcgtggatgataagaagctgagagtgttcaagaacgtcgacgtt
acgatcgacggcaagatcgtcacaatggagtgggtagcaacgccggtgaacgatatgtat
gcggattccgttctcaccgcaatcctacaggctgaaataatggagcagtcaccgaaggtt
ttgcctgcgcccaccaagatggatagaatgcacttcaaagaatgccttattgaaatgctg
caggagatgttcggcgaggattctgtgcccaagatattcaagggcgagaaactctatgtc
acagtagacggtaaaaaggcgcatatagacttgctgaacttggaggttacgagcaaggaa
gacgaaacctttcagcagatagtgcaaacggcggtgacaaagttgcatcaatcgttggcg
ccgccttgcgatgtaatatag
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