Solenopsis invicta (red fire ant): 105201852
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Entry
105201852 CDS
T03916
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
soc
Solenopsis invicta (red fire ant)
Pathway
soc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
soc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105201852
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
soc03019
]
105201852
Messenger RNA biogenesis [BR:
soc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
105201852
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
105201852
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
105201852
NCBI-ProteinID:
XP_011168409
LinkDB
All DBs
Position
9:complement(16675356..16686912)
Genome browser
AA seq
2404 aa
AA seq
DB search
MNLDSLSFTLSQISYLVANLSKKNFEDSCRRISGYVQWHGLEVDRHLLRCLISCVDFSKG
EPSDSSGKDYFQAKLLKQECNSLLSKPSFTSTLCFAIDNPLHHQKSLNPTPKFFVNLKKT
LGLTLVQEVAFAIALQQSENAEIRALALEHTQKQLLELIKNYINSETSNKHHEGGLHDSL
PQVLHLILIQAFNTANPYNLPTETKEKFRKHLRRDFPRELVPVVLAPFLYPGDEEPLQFK
IELNMAVTQMDSNTLVELIMELGYSFTTSIDECRSALTGLGAREISPACVARVLSQMARS
CSNLDDAGGLQAFWGNSTASQDSNKEKPADSTIPTTWNVEIFVLTLKEIQSTLSWNEVII
KLDHPEFIIKDRQGLNLLITGLKLGLQQQGYPPDMFPVELLYRHWENVEGQFSLIQQILK
CPDIFCFADYPYHSVTVDVLKAAPEGDSKEGQTWRSLNIVELLLHMAERGLYNPVQEIFK
WPLQHCPDVLILALLQINPPFTLLRQELFTTLLPIFLGNHPNSAVILHHAWHANNPKIKT
LIMHAMADWYTRGDHDQTRLSRILDVAQDLKALSALLNSQSFPFVIDLACLASRREYLKL
EKWLTDKIRDHGEVFVAACVKFLQRRCPQVMGPGIKEDPTVPKASQLPQETLTTILACLQ
VCAGSVSQELSELIMTMVQNCSLMLSKSTMNRPPPPGVLRHRGLEPFNPATLGSQLFSSK
QVDPLGNLNTSLASMGLGTGLGPPSSSAFNLPGALGPLVSAPGSPSRLMGPSPSPFPTML
PLSSQLHSGPVGTQGPSVLPSGTIGGLGRLGPPAGIEKARIPETSNLFPDMGQNVSKEVE
DEANSYFQRIYNHPPHPTLSIDEVLDMLKKFQDSGIRREREVFNCMLRNLFEEYRFFPQY
PEKELQITAQLFGGIIERGLVNSYVTLGLALRFVLDALKKPEGSKMYYFGITALDRFKSR
LKEYQTYCEHVRTISHFAEFPPHLVEYIEYGLQGQEPPSRPQGPKTLAAMLAPVTTPYKT
MTTTTITTSTTQAKPSTTPTTSLSARPSMPSVANATNIDTLLVATDKEEKITTPPEALQD
KTAFIFNNLSQLNLQQKCDEIREIVTEEYWPWMAQYLVMKRASIELNFHALYSNFLDCIK
LPEVNKMVTRETFRNIKVLLRSDKGIANFSDRSLLKNLGHWLGMLTLGRNKPILQIDIDL
KSLLVEAYHKGQQELLYVVPFVAKVLESCAKSRVFRPPNPWTMAIMNVLAELHQEPDLKL
NLKFEIEVLCKNLSIDVGELKPVIYLKDPEKLRNLEYQLSHPNKKSETTNNQQQPQGPIE
ELVGPTTSGTINPQTAPPVNTTPSLPAGPPEPRFNYMDISVTGIANISQHITINNQLPLF
QTHPHLKQFIRPAVERAIQEWIHPVVDRSIKIALTTSEQIVRKDFALDPEEVRMRTAARH
MARNLTAGMAMITCRDQILASISTNLKQAFLTALIGTTPQQKELVEQAASVVAADNMELA
CAFVQKTAIEKAIPEMDKRLLNEIELRKIARQEGRRYCDPLAKYQAERMPEQIRLKVGGV
TPQQMAVYEEFARNIPGFLPLSERDTQTLFIPKPISEAPLTAFTPNSAVAVATAQQVAAY
ATVAVSNDEVGAMLEKLATEVEVLLAAMVPAAPPPQHAILHSLLESIVLTRRSRDANAAM
ALLKKAVEGLLDGPILNSGVIESENLIQRYRELHLRILKCLQDPRAYGMQWTNKHVTRCL
IECREDYRYNFEAVDYLIRSHLISLPQYDIAVAQAVEAGNALATVFAMQLVQLYLIDERQ
ATHVTETDLFHTIEILARMSHHRTPPEGISLYRLTSLVESLRANVDSGILVDRAPAGPTA
HIHSGILQVRARDFDDPPGLMDKTEYLLREWVQMHHNPQYARDPTKAFSIFVHQMNIHGI
LKTDDLITRFFKLSTQMCVELCYRTLSETGLAPSIIRAKCFHSLDAFVRLVALLVKHSGD
ATNTHTKINLLNKVLGIVAGVLLQDHEIRGSDFQQLPYHRIFIMLFLELCAPEPVLEAVN
FQVLTAFCHTLHILRPAKASGFCYAWLELVSHRVFIGRMLAITPQQKCWGMYAQLLIDLF
KYLAPYLRNAELAKPVTSLYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQMRNLI
LSAFPRNMRLPDPFTPNLKVDMLQEIAHAPRVLTNFASTIQPLTFKKELDSYLKARAPVT
FLSELRSNLQVSQEAGVRYNIQLMNALVLYVGTQAIAHIRNKGHAPNMSTIAHSAHMDIF
QNLAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCTILYLFAEANTEAIQEQITRVLLER
LIVNRPHPWGLLITFIELIKNPNYKFWSHEFVHCAPEIEKLFESVARSCMVQKQVPSTET
EIPE
NT seq
7215 nt
NT seq
+upstream
nt +downstream
nt
atgaacctggactcgttgtcttttactttgtcacaaatcagttatttggttgcgaatttg
agtaagaaaaatttcgaggacagctgtcggcgcatatcgggctatgtgcagtggcatggt
ctagaggtggaccgacacttgttacgctgtctgatctcgtgcgttgacttttcgaagggc
gaaccatcagattcgagtgggaaagattatttccaagcaaagttactaaaacaggagtgc
aatagcttattgagcaaaccttcttttacatctactttgtgctttgccatagataatcct
ttacaccatcaaaagtcattgaatcctactcccaagttttttgtcaatttgaaaaaaaca
cttggcctgaccttggtacaggaggtcgcatttgcgattgcgttacagcaatcggaaaac
gcggaaattcgtgctttagccttagagcatactcaaaagcagctacttgagttaataaag
aattatataaactctgagacgagcaacaaacatcacgagggtggtttgcacgattctttg
cctcaagtccttcatttgatacttatccaggcttttaatactgccaatccatacaatcta
cctacggaaacgaaagaaaagtttcgcaaacatttgagacgcgactttcctcgtgaattg
gtaccagtggtgttagcaccatttctgtatccaggagacgaggaacctctgcaattcaaa
atcgaattaaacatggccgtcactcaaatggatagtaacactcttgtagagttgattatg
gaattaggatatagttttactactagcatagacgaatgtcgatcggcattaacgggctta
ggtgccagggagatatccccagcatgtgttgctcgtgtattgtcacaaatggcacgtagc
tgcagcaacctcgatgatgctggaggcctacaagcgttttggggcaattcgaccgcctca
caggactcgaataaagaaaaaccagcggatagtaccattcctacaacatggaacgttgaa
atattcgttctcacgttgaaagaaatacaatctacattgtcttggaatgaagtcatcata
aaattagatcatccagaatttattatcaaggataggcaaggtttaaatttactgattacg
ggtctcaagctaggcctgcagcaacagggatatccacctgacatgtttcccgttgaactc
ttgtatcgacactgggaaaatgtagaaggccaattttctttaattcagcaaattctcaaa
tgcccggatatattttgcttcgctgactatccgtaccattccgtgacagtcgatgtattg
aaagcggcacctgagggcgatagcaaggaagggcaaacgtggcgatcgttgaacatagtc
gagttgcttttgcacatggccgaaagaggcttgtacaaccctgtgcaggaaatcttcaaa
tggccacttcagcattgcccagatgtgctcatcttggctttattgcagataaatccacct
ttcacgttactgagacaggaattgttcaccacgctgttgccaatctttcttggcaatcat
ccaaattctgctgtgatactgcatcatgcgtggcatgctaataatcccaagataaagaca
cttataatgcatgctatggcagattggtatacacgcggtgatcacgatcaaacaagatta
tcgcgaatcttagatgtcgcccaggatttgaaagcactctctgctttacttaattcgcag
tcatttccattcgtcattgatcttgcctgtttagcttctcgacgagagtatctgaaactt
gaaaaatggttaacagacaagattagagatcatggagaagtttttgttgctgcatgtgtg
aagtttctacaacgacgatgtcctcaagttatgggtcctggtatcaaagaagatcctacg
gttcccaaggcaagccaactgccacaagaaacactcacaacaatcttagcttgcttgcaa
gtttgtgccggaagtgtctcacaagaactttcggaattaataatgacgatggtgcagaat
tgcagtctaatgctaagtaagagcaccatgaacagacctccaccgccaggagttctgaga
catcgaggattagaaccatttaatccagcaactttaggaagccaactattttcttcaaag
caagtggatcctcttggaaatcttaatacaagtcttgcttccatgggtcttggaacaggt
cttgggcctccaagtagctccgcatttaatttacctggcgcgctaggtcccctggtttcg
gcgcctggctctccctcacgactcatgggaccttctccaagtccatttcctactatgttg
ccattatcctcacaattacactcaggtccagttggtactcagggaccctctgtgctccct
agtggtacgataggtggattagggcgtctcggaccaccagccggtattgaaaaagcaaga
ataccggaaacctccaatttgtttccagatatgggacaaaatgtatctaaagaggtcgag
gacgaagctaatagctattttcaacgtatatacaatcatccaccgcatccgactttatcg
attgatgaagtgcttgatatgttgaaaaaatttcaagattctggtattagacgggaaaga
gaggtgttcaactgtatgttacgaaatttatttgaagaatacagatttttcccacaatat
ccagaaaaagaattgcaaataacggcacaattgtttggtgggattattgagagaggtctt
gttaacagttacgtgacacttggattagcgttgcgattcgtccttgatgcgcttaaaaaa
ccagaaggcagcaagatgtattattttggcataacagctttggatcgatttaagagtcgt
ttgaaggaatatcaaacatactgcgaacatgttagaacgatttcgcatttcgctgaattt
ccacctcacctagtggaatatatagagtatggattacaagggcaagaaccaccgtcgaga
ccgcagggtccaaaaactttagcagcaatgttagctccagttacaaccccgtacaaaact
atgactacgactaccatcacaactagcaccacgcaagcaaaaccatctacgactccaact
acgtctctctcggccagaccctctatgccatctgtcgcaaatgcaactaatatcgataca
ttgcttgtggcaacagataaagaagaaaaaattacgacgccaccggaagctttgcaggac
aaaactgcttttattttcaataatctcagccaattgaatttgcagcaaaaatgtgacgag
atccgcgaaattgtcacggaagaatactggccgtggatggcacagtatttagtgatgaaa
cgtgccagcatagaattgaactttcatgctttatactcgaattttctagattgcataaaa
ttacctgaagtgaataaaatggtcacaagagaaacattccgaaatattaaagttctctta
cgaagtgataaaggaatagctaatttctctgatcgatcgttgttgaaaaatttaggacac
tggctcggaatgttgacacttggcaggaataagcctattttacagatagacatagatttg
aaaagcttacttgttgaagcatatcacaaagggcaacaagaacttctttatgtagtacct
tttgttgcaaaagtacttgagagttgtgcgaaaagtcgtgtttttcgaccacccaatcca
tggaccatggcaattatgaacgttttagccgaattacatcaagaacctgatttgaagctg
aatttaaaatttgaaatagaagtactttgcaagaatctaagcattgatgttggagaacta
aaaccggtcatttacttgaaagatcccgaaaaattgcgcaatctagagtatcagttatca
catccgaataagaaatcagagacgactaataatcaacagcaacctcaggggcctatagag
gagttagttggtccgacaacgagcggcaccatcaatcctcaaactgcgccaccagtaaac
acaacaccttcgttaccggctggtccaccagaaccacgatttaattacatggatatatct
gtaacgggcattgctaatatatctcaacacattactattaacaatcaattaccgttattc
caaacgcatcctcatttgaaacagtttatacgcccagcggttgaaagagcaattcaggaa
tggatccatcctgtggtagatcggtctattaaaattgctcttacaaccagcgagcaaatt
gtgaggaaagattttgctttggatccagaggaagtacgaatgcgtacagcagcgcgtcat
atggcgcgtaacttaaccgctggcatggctatgatcacatgtcgtgatcagattttggca
tcaattagtacgaatttgaaacaagcctttctcacagcgttgattggtacaactccacag
cagaaggaacttgttgaacaagcagcaagtgtagttgctgctgataacatggaattggca
tgtgcgttcgtacaaaaaactgctattgagaaagcaatacctgaaatggataaacggtta
ctaaacgaaattgagttgcgaaaaatcgctcggcaagaaggaagaagatattgtgatcct
cttgctaaatatcaagctgagagaatgccagagcagataaggttgaaagtcggtggcgta
acgcctcagcaaatggctgtatacgaagagtttgcaagaaatattccgggatttcttcct
ctctctgaacgggatacacaaacactctttataccgaaacctatttcggaggctcctctt
actgcattcacacccaactctgcggtggcagtcgctacagcacaacaagtagcagcctat
gcaactgtagcagttagcaacgacgaagtgggtgcaatgttggaaaaacttgcaacagaa
gttgaagtcttgttagctgctatggtacctgcggcacctccaccgcaacacgctatcctt
catagtcttctagaatctattgtactcacgagaagatcaagagatgccaatgcagctatg
gcattattaaagaaggcagtcgaaggtttgctagatggacccatcttaaacagtggcgtc
atcgagtctgaaaatctaatacagcgctacagagaactgcacttacggatcttgaagtgt
cttcaagacccacgtgcatatggtatgcaatggaccaacaaacacgtgactcgttgtcta
atcgaatgccgggaagattaccgatataatttcgaagctgtagactatcttataagatct
catttgattagtcttccacaatatgacatagctgtagcgcaagctgtagaggcgggaaat
gccttggcaacagtatttgctatgcaattggttcaactttatttgattgacgagaggcaa
gcgactcatgttaccgaaactgacttattccatacgattgagatattggctcgaatgtcg
catcatcgaacaccaccagaaggaatttcgctctacagactgacgagtctagtagaatca
ctgcgtgccaatgtcgattctggtatcttggtagaccgagctccagcaggacctacagcc
cacattcattccggaatcctgcaggtgagagctcgcgattttgacgatccacctggattg
atggataaaacggagtatttgttacgtgaatgggtacaaatgcatcataatccacagtac
gcacgagatccgacgaaggcgtttagcatatttgttcatcaaatgaacattcacggcatc
ctgaagaccgacgatctcatcacgagatttttcaaattgagtactcagatgtgcgtcgag
ctttgctaccgaacactatcagaaactggcttagctccctcgatcatacgtgcgaaatgc
ttccactcattggatgcgtttgtacgtctcgtggcacttctggtgaagcactcaggcgat
gctactaacactcataccaagattaatctcttaaataaagtgcttggtattgtagccgga
gtgctgttacaagaccacgaaatacgcggctccgatttccaacaattgccgtaccataga
atcttcatcatgcttttcttggaattatgcgcgcctgaaccggtactagaagccgtgaat
ttccaagttctgactgccttctgccataccttacacatcttacgaccagcgaaagcatca
ggcttctgttacgcttggctggagttagtttcacaccgagtcttcatcggccgtatgcta
gctatcacgccgcagcaaaagtgctggggaatgtatgcgcagcttctcatcgatttgttt
aagtacctcgcaccgtatcttcgaaatgcggagctagcgaagcctgtaacgagtctgtac
aaagggacgctacgtgtgttacttgtattgcttcatgacttcccagagttcctttgtgat
tatcattatggattttgcgatgtgataccaccaaattgcatacaaatgagaaatctgatt
ctgagtgcgtttccgagaaacatgcgactgccggatccatttacgccaaatctaaaggtc
gatatgctacaggagattgctcacgccccgcgtgttctcaccaattttgcgtccacaata
caaccgttgacattcaagaaagaactcgactcttatttaaaggctcgtgcgccggttacc
tttttatctgaacttcgcagcaatttgcaagtgtcacaagaggctggtgtgcgttataat
attcaactgatgaatgctctagtgctttacgtaggcacgcaggctattgcacatattcgc
aataaaggccatgctcctaatatgtctaccattgcacactccgcacacatggacatcttc
cagaatttggctgtcgatctggataccgaaggccggtatttgttcctaaacgccattgcg
aatcagttgcggtatcctaatagtcacacgcattacttcagttgtacgattctttaccta
ttcgctgaagcgaatacggaagcgatacaggagcaaattacgagggtccttttggaaaga
ctgattgtcaacagaccacatccatggggtcttctcatcactttcatcgaactgatcaag
aatccgaattataaattctggtcacacgaatttgtacattgtgcgccggaaattgagaaa
ttgttcgaatccgtagctagatcgtgtatggtacagaagcaggttccctcaacggagacg
gagattccagagtga
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integrated database retrieval system
