Solenopsis invicta (red fire ant): 105201945
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Entry
105201945 CDS
T03916
Name
(RefSeq) CCR4-NOT transcription complex subunit 3 isoform X2
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
soc
Solenopsis invicta (red fire ant)
Pathway
soc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
soc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105201945
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
soc03019
]
105201945
Messenger RNA biogenesis [BR:
soc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
105201945
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
105201945
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
V-SNARE
Motif
Other DBs
NCBI-GeneID:
105201945
NCBI-ProteinID:
XP_011168542
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All DBs
Position
1:complement(27134927..27145541)
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AA seq
748 aa
AA seq
DB search
MCAYVVKNCTNSFITVKLKSLLIKLFTCPKAAADAVFAESYSVKRRKDEVNMTNGEIDRC
LKKVTEGVETFEDIWQKVHNATNSNQKEKYEADLKKEIKKLQRLRDQIKSWIASGEIKDK
STLLDYRKLIETQMERFKVVERETKTKAYSKEGLGAAQKLDPAQKEKDEVTNWLANSIDA
LNLQMDTFESEIESLQAGKKKRIDKDKQDRVDELKAKLDKHRYHIRKLETLLRMLDNMSV
EVNTIKRIKDDVEYYIESSQDPDFEENEYIYDDIIGLDEVELSGVGIPSSATTDSNNSNE
TGGTPTSTNSCTSPIPSPSLSSTMHNHSSDSSTDNDKKTKPVKPTAVRPLLNTQASIPTT
GSTATIKSNMLSSSTPSKTIPMTPSHSSPSSTSNHIATTNAGNFATVAASHSNSQAIHST
SNKTSTHNSENNILSTSSTSSVTSNVPQTVTQQHNNNPAPVQTTHVLHSQQSQNHNSETE
MTTPVPPSSSPQSSVSSRSSPMPANSCSPAPSTANGLIPKLPDGSMSSLKSIAQQVIVRA
GLEIPPSEPNRNIFDSAKTSNSSNNNATSEAHIPPLLGVAPLGPVPLQKEHQLQFQMMEA
AYYHMPHPSDSERLRSYLPRNTCTTPPYYQQTTRIDAANARTCLVQVQLPHSDTVEFFQR
LSTETLFFIFYYMEGSKGQYLAAKALKKQSWRFHTKYMMWFQRHEEPKVINEEYEQGTYI
YFDYEKWGQRKKEGFTFEYKYLEDRDLN
NT seq
2247 nt
NT seq
+upstream
nt +downstream
nt
atgtgtgcttatgtagtaaaaaattgtaccaattcgtttataacagtcaaacttaaaagt
ttgctgattaaattgtttacgtgtccaaaagctgcagcagacgcagtgtttgctgaatca
tatagtgtgaaaaggcgtaaagatgaagtaaatatgacaaatggtgaaatagatcggtgc
cttaaaaaagtaacggaaggtgtggaaacctttgaagatatttggcaaaaagttcataat
gccacgaacagtaatcagaaggaaaagtacgaggctgatctcaaaaaggaaatcaagaaa
cttcaaaggttacgcgatcaaattaagagctggatcgcgtcgggtgaaataaaggataag
agcacacttctcgattatcgcaagttgattgaaactcaaatggaaagatttaaagttgta
gaaagagagacgaaaacaaaggcttattctaaagaaggtttaggcgctgctcagaaatta
gacccagctcagaaagagaaagatgaggttactaattggcttgccaattctatagacgct
ctcaatcttcagatggatacatttgagtcggaaatagaatcgttacaagcgggaaagaag
aaaaggatagacaaagataagcaagatagggtggacgaattgaaggcaaagctcgacaaa
caccgctaccatatccgtaaattggagacattattacgtatgcttgataatatgtctgtc
gaagtcaacacaatcaagaggataaaggatgatgttgagtattatatcgaatcttcgcaa
gatcccgattttgaggaaaacgaatatatttacgatgacattatcggcctcgatgaagtt
gagttgtccggtgttggtatcccctcgtcagcgacaacggatagtaacaacagtaatgaa
accggagggacgccaacatcaactaattcttgtacttcgcctataccatcaccgtcgtta
agctccactatgcataatcattcgagcgatagttctacagacaatgacaagaaaaccaag
cctgtgaaaccgacagcagtcaggccgctactgaatacgcaagcgagcattccaaccacg
ggaagcactgccaccataaaatcgaacatgttatcgagcagcactccaagcaaaaccatt
cccatgacacctagccatagctcgcctagttctacgagcaatcacattgccacgactaat
gccggcaatttcgccaccgtagctgcctcgcacagcaattcgcaagccatccattctacc
tccaacaaaacatccactcacaacagcgagaataatatcttgtcaacgtcatctacgtcc
agcgttacgtcgaatgtgccgcaaacggttacgcaacagcacaataataatccggcgccg
gtacagacgacgcacgtattgcacagtcagcagagtcagaatcacaatagcgaaaccgaa
atgacaacgccggtaccgccatcttcgtctccgcagtcgtcggtcagcagtagatcctcg
ccgatgcccgcaaactcctgctcgccagcaccgtccactgccaatggtctcatccctaag
cttcccgatggaagcatgtcctctctaaaatccattgcccaacaagtaattgtccgagca
ggtctcgagataccaccctccgagccgaatagaaacatctttgacagtgccaagacgagc
aacagtagcaacaataatgcgacgtcggaagcacacattcctccgctgcttggggtcgcg
cccctgggacctgtaccgttacagaaggagcaccagctgcagttccagatgatggaagcc
gcctactatcatatgccgcatccgtctgactcggaaagattacgttcgtatttgccgaga
aatacgtgcaccactccaccttattatcagcagaccacacggattgacgctgctaacgca
cgcacgtgcttggttcaggttcagcttcctcattcggatacagtggagttcttccaacgc
ctttctacagaaacattgttcttcatattctattatatggaggggtctaagggacagtat
ttagcagcaaaggctctgaaaaaacaaagctggaggtttcacacaaagtatatgatgtgg
ttccaaaggcacgaggaaccgaaagttattaacgaagaatacgagcagggaacatacatc
tattttgactacgaaaaatgggggcagaggaaaaaagaaggatttactttcgaatacaag
tacttagaggacagagatctgaactaa
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