Solenopsis invicta (red fire ant): 105202095
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Entry
105202095 CDS
T03916
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
soc
Solenopsis invicta (red fire ant)
Pathway
soc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
soc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105202095
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
soc03041
]
105202095
Spliceosome [BR:
soc03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
105202095
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
EIF3I
WDR55
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_1st
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR75_1st
ANAPC4_WD40
PRP4
Beta-prop_EML
Beta-prop_TEP1_C
WDR90_beta-prop_4th
Beta-prop_EIPR1
NBCH_WD40
Beta-prop_DCAF4
Beta-prop_RIG_2nd
Beta-prop_IFT122_1st
Beta-prop_SPT8
Beta-prop_IFT140_1st
Beta-prop_SCAP
Beta-prop_HPS5
Ge1_WD40
WD40_RFWD3
Beta-prop_Nup120_160
Nbas_N
WD40_like
Motif
Other DBs
NCBI-GeneID:
105202095
NCBI-ProteinID:
XP_011168785
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Position
7:647685..650360
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AA seq
523 aa
AA seq
DB search
MSDDEDLVYVKKQKTVHYGSLEEAERARLAAAVESTDEEKDVTSANDAVNASASGGNVHI
SNEYMELEDEMSKDRQALLEEFERRKKARQINVSTDDSEVKKHLRQLDEPICLFGEGPAD
RRTRLRELLASVGEDAIKKKHEEEEKPTHTLEKDTESTWYHEGPDSLQIARSWIASYSLP
RAKARLDKARQDLLLPSATRTAKRQELLKKLQALSIYCSQIGDRRPISFCQFSPNSKILA
TASWSGLCKLWSVPDCTLLRTLQGHNCNVSCIVFHPKATITEDVVGDNAEQICVLASCAA
DGTVKLWGGGTGEEPLAEVEGHEPHRVSKIAFHPSGRFLGTCCYDASWRLWDLEQQAEVL
HQEGHARAVHCISFQCDGSVCTTGGHDSFGRVWDLRTGRCIMFMEGHLTSIFGIDFSPNG
FHVATASEDNTCKIWDLRKRTCIYTIPAHTNLLSDVKYQRTEGQYLVTASYDNTAKIWSN
KTWQPLKVLPGHDGKVMSVDVSPDHKFIATSSYDRTFKLWAPE
NT seq
1572 nt
NT seq
+upstream
nt +downstream
nt
atgtccgacgacgaggatttggtttatgtaaagaaacagaaaactgttcattatggctct
ctcgaggaggccgaacgtgcacgacttgcagctgctgtcgaaagtacagacgaggaaaag
gatgtcacaagtgcgaacgatgccgtcaatgcttctgcctcagggggaaatgtacacatc
tcgaatgagtatatggagcttgaagatgaaatgtccaaagatcggcaggcgttattggag
gaatttgaacgtaggaaaaaggctagacaaattaatgtttctacagatgattccgaagta
aagaaacacctgagacaattagacgagccaatatgtctatttggggaaggtccagcggac
agaagaacaagattaagagaattattagccagtgtgggagaggatgctattaaaaagaaa
catgaagaggaggagaaaccaactcacacactcgaaaaagatacagagtcaacttggtat
cacgaggggccagattctttgcaaattgcacgatcatggatagcatcatattcattaccc
agagcaaaggctcggctggataaggcaaggcaagatctactgttaccttctgcaacacgt
acagcgaaaaggcaagaacttttaaagaagttgcaagcactgagcatttattgttctcaa
atcggagacagaaggcccatttccttttgccagtttagtcctaattcaaaaatccttgct
acagcttcatggtcaggcttgtgcaaattatggtctgtacccgactgtactttgttgcgc
actttacaaggacataattgtaatgttagctgtattgtttttcacccaaaagctaccata
accgaagatgtggtaggtgataatgcagaacagatttgtgtgctggcatcttgtgcggca
gatggtactgtgaaattgtggggcggtggcactggtgaagaaccattagcggaagtggaa
ggacatgaacctcatagagtttccaagatagcgtttcatccatctggacgatttctcggc
acatgttgttacgatgcatcttggcgattatgggatttggagcaacaagcggaagtactt
catcaagaaggtcacgctagagcagtacactgtattagctttcaatgcgacggaagcgtt
tgcaccacaggcggtcacgactctttcggcagagtatgggacttgcgaaccggcagatgc
ataatgttcatggagggtcatttgacgtccattttcggcatcgatttctcgccaaacggt
tttcacgtagcgacagcgagcgaggataacacatgcaagatatgggacttgcgaaagcga
acctgcatatacacgataccggcacacacgaacttactgtccgatgtgaagtaccaaaga
acagaagggcagtacttggttaccgcgtcttatgataacacagccaaaatttggtccaac
aagacgtggcagcctctcaaagtgttaccaggtcacgatggaaaagtcatgtctgttgac
gtatcacctgatcataagttcatagcaactagttcgtacgatcgaacttttaaattatgg
gccccagaatga
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integrated database retrieval system
