Solenopsis invicta (red fire ant): 105202237
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Entry
105202237 CDS
T03916
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
soc
Solenopsis invicta (red fire ant)
Pathway
soc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
soc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105202237
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
soc03041
]
105202237
03009 Ribosome biogenesis [BR:
soc03009
]
105202237
Enzymes [BR:
soc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
105202237
Spliceosome [BR:
soc03041
]
Complex A
U1 snRNP components
U1 related factors
105202237
Complex B
105202237
Ribosome biogenesis [BR:
soc03009
]
Eukaryotic type
Pre-60S particles
Helicases
105202237
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DUF6505
Motif
Other DBs
NCBI-GeneID:
105202237
NCBI-ProteinID:
XP_011168949
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All DBs
Position
13:2307440..2325774
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AA seq
735 aa
AA seq
DB search
MYNAYSQHSQVQNNYRFKGNAHRDGHRREFNNTAVSGTYWNSHQQSQRGETGIKKQNHKK
TPGEFLKKPNWDMQNMPPLKKNFYDPHHNVLNRTPDEISKYYAGKEITVKGNNTPFPVQA
FEESNFPDYVMNEIKKQGFAEPTAIQAQGWPIALSGRDLVGIAQTGSGKTLAYILPAIVH
INNQPRLSRGDGPIVLILAPTRELAQQIQTVARDFGSSSCIRNTCIFGGSPKGPQARDLE
RGVEICIATPGRLIDFLEKGTTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQV
LMWSATWPKEVQALAEDFLTDYIQINIGSLTLAANHNIRQIIEICQEHEKETKLSQLLRE
IGAERSKMIIFVETKKKVDDITKTIKRDGWPAISIHGDKSQPERDYVLSEFRNGKTMILV
ATDVAARGLDVEDVKYVINFDYPNSSEDYIHRIGRTGRCQSAGTAYAYFTPNNARQAKEL
IAVLEEAGQAINPQLAEMANSVRNQYGKGRTRWYNLRSTINHYNKDNNSHGSPRNNISPT
TNNWQHMLQTNTQHGQQHGQHGHHNQMMNQEKPVTRHPRNNSNNSYQTNRQNQHQNYQPQ
HSYQQQHQQRQSITGYPNSYQTTNNTCQPTHQTTSAPRYQGRTGYQGNRFQNRQNGFSSN
QNQPNVYSMPPHFMMPSGGPADSGIQNLMNNKFFQTNRPPPNAGACAYQSMGYGHPTLQA
VPPYAYTYPPTPVQQ
NT seq
2208 nt
NT seq
+upstream
nt +downstream
nt
atgtacaacgcgtactctcagcattctcaggttcagaacaattacagatttaaagggaat
gcccatagagacggccatcgtcgagagtttaataatacagctgttagcggaacatattgg
aatagtcatcaacagagtcaaagaggagagactggcataaaaaagcaaaatcacaagaaa
actccgggcgaatttctgaagaagcctaactgggatatgcaaaatatgcctccattaaag
aagaatttttacgatcctcaccacaatgtcttgaacagaacacctgatgagatcagcaaa
tattatgcgggcaaagagattactgttaagggtaacaatacaccttttcccgtccaagcc
ttcgaagagagtaactttcccgattatgtgatgaacgagattaagaaacaaggtttcgcc
gagccgactgcaattcaagctcagggctggccaattgctcttagcggacgagatttggtt
ggaattgctcaaacgggttccggaaaaactttggcatatattcttccggcaatagtgcac
attaacaatcaacctcgtcttagccgtggcgacggaccaattgtcctgattctcgctccc
acgcgcgaattggctcaacaaatccaaacggttgcacgtgattttggttcgtcctcgtgt
atccgcaacacctgcatctttggcggctcgccgaagggacctcaagcacgcgatcttgag
cgcggagtggaaatctgtatcgcgacacccggtagactgatcgatttcctcgagaaaggt
accacgaatttgcgtaggtgcacatatttggttttggacgaggccgatcgaatgcttgat
atgggtttcgagccgcagatacgcaaaatcatcgaacagattcgacctgatcggcaggta
ctcatgtggtctgccacttggcccaaagaggtgcaggctcttgccgaagacttcctcact
gattacatccagataaatattgggtcattaactttggcagccaatcataacattcgacaa
attatcgagatctgccaggaacacgaaaaggaaacaaaattgtcgcaattgttgcgcgaa
attggggccgagcgcagcaagatgatcatttttgtggagacgaagaaaaaggtcgatgac
attacgaagacgattaaacgcgatggctggccagcaatctcgattcacggtgacaaatcg
cagccggagcgcgattacgttctatcagaattccgtaatggaaagactatgatcttagtc
gcgacagatgtggcggcgcgcggcttggatgtcgaggatgtcaagtacgttattaatttt
gactaccccaatagttccgaggactacatccacaggatcggcagaaccggtcgctgccag
agcgcaggcactgcctatgcttactttacaccgaacaacgcgaggcaagcgaaagaatta
atcgcagtgctggaggaggccggtcaagctataaacccacaattggcggaaatggcgaat
tccgtcaggaaccaatacggcaagggacgaacacggtggtataacttgcgatcaacgata
aaccattataataaggataacaattctcacggaagtcctagaaacaacatcagcccaacg
acgaacaactggcagcatatgttgcagacgaacacacagcatgggcagcagcatggtcag
catggacatcataatcaaatgatgaatcaagagaagcccgtaacacgtcatccacgcaac
aatagcaataacagctatcaaaccaatcggcagaatcaacatcagaattaccaaccacag
cattcctatcagcagcagcatcagcagcgacaatccatcactggctatccaaacagctat
caaacgactaacaacacttgtcaacctacgcatcagactaccagtgcgcccagataccaa
ggcagaactggatatcagggtaatcgtttccaaaataggcagaacggcttcagcagcaat
cagaatcaaccaaacgtttattcgatgccgccgcacttcatgatgccgtccggtggaccc
gcggactctggtattcagaatctcatgaacaacaagttcttccagaccaatcgaccgccg
cccaacgctggtgcctgtgcctatcaatcgatgggctatggccacccaacgcttcaagca
gtgccgccgtatgcttatacgtacccgcccacaccggtacagcagtga
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