Solenopsis invicta (red fire ant): 105202417
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Entry
105202417 CDS
T03916
Name
(RefSeq) DNA mismatch repair protein Msh2 isoform X2
KO
K08735
DNA mismatch repair protein MSH2
Organism
soc
Solenopsis invicta (red fire ant)
Pathway
soc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
soc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
105202417
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
soc03400
]
105202417
DNA repair and recombination proteins [BR:
soc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
105202417
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_II
MutS_IV
MutS_I
AAA_27
Motif
Other DBs
NCBI-GeneID:
105202417
NCBI-ProteinID:
XP_011169227
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Position
7:12536485..12555441
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AA seq
922 aa
AA seq
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MAVQPNQQFHMDPPTQQSFVRFFKSLPEKLDTTIRFFNRSDYYTVHGSDALFAAQEIFKT
TSVCKMIGAEPHKTEGVILNKSHFETFVRDLLLVKQYRVEVYVNQGSSKNQNWILEYKGS
PGNLSHFEDILFGNNDVAVGVSVIAVKLGTEGKSRVVGLSYVDVVSTLISVTEFQDNESF
SNLEALIVTLAPKECLLIQGEGSYEFQTLKQLIERSNVMVTLRKKTEFASDSIIDDLNTL
IKFKKGQKQNAQSLPEVNLNLAMSATSALIKYLDLTSDEGHLNQFKLNQIEQSRYIRLDS
AAIRALNIEPQADAISNLHGNPVSSILTLLDKCRTAQGHRLIAQWVRQPLRDLSLIKERH
DIVELLVQNNELRSILSDDYLKRIPDLQQLAKKLARKKSVLQDCYKIYLCVSYLPKLLEQ
LSQEENVTALKTMIIDPLKELVNDMDKFQQLVEQTIDLDAAEKGEFMVNPGFADDLKVLK
DAMTETEETIQQQLNKAANDLCLEAGKVIKLENNQQFGYYFRITLKEEKILRNKKHYTIL
DSNKAGIRFRNNRLNELNDDFTDARNKYMERQKDVITEIVGIAAGYSGTVRAIGDVLACF
DVLTSFASAAISANKMYVRPKMVSSEEGELNLTQVRHPCLEMQQGVDYIANDIDFKRDQY
RFCIITGPNMGGKSTYIRSVGVAALMAHIGSFVPCDKATISLLDCILTRVGADDSQLKGL
STFMMEMIEIAAILKTATCNSLVIIDELGRGTSTYEGCGIAWSIAEHLARDIKSYCLFAT
HFHEITKLAEEIPTVKNQHVTALVEDDKLTLLYQVKPGICDQSFGLHVAKMANFPLDVIE
FAKRKQAELENYEGIAFEGSDNPQKKRKIIQEGEILISQFLTKCKDLDQSLPDTALESQV
SSLKEDILSHKNPYIEALLAAS
NT seq
2769 nt
NT seq
+upstream
nt +downstream
nt
atggcagtgcaacctaaccaacagttccacatggatcctcctacgcagcagagctttgtt
agattttttaaaagtctgccagagaaacttgataccacgatacggttcttcaatagatca
gattattatacggtacatggaagcgatgctctctttgccgcacaggaaatatttaaaaca
acgtcagtttgtaaaatgattggagctgagccgcacaaaacggaaggagttattctcaac
aaaagtcatttcgagacatttgtgcgcgatttattattagtaaagcaatacagagttgaa
gtttatgtcaatcaaggctcgtctaaaaatcagaactggatcttggagtacaaaggttcg
cctggcaatctgtctcatttcgaagatatcttattcggcaataatgatgtagctgtgggt
gtatccgtaatagctgtgaaactgggcactgaaggaaagtccagagtcgtcggcttaagt
tatgtggatgttgtttcaacattaatttcagttaccgaatttcaagataacgaatcattt
tcgaatctagaagcgcttattgtaactcttgctccaaaagaatgtttgttaattcaggga
gaaggcagttatgaatttcaaactctcaaacaactaatagaaagaagtaacgtgatggtt
actttacgaaaaaaaactgaatttgccagtgattcgattatagatgatctgaatacatta
ataaaatttaaaaaaggacaaaaacaaaatgcacaatcattacctgaagtgaacttaaat
ttggctatgtctgcaacatctgctctcattaaatatttagatttaacatcagacgaaggt
catctgaatcaatttaaactgaatcaaatcgaacaatcgcgatacataagattggattct
gcggcaataagagctcttaacatcgaaccacaagctgatgcaatttctaacttacatgga
aatccagtgtccagtattttaacattattagataaatgtagaactgcgcagggacaccga
ttgattgcgcaatgggttcgacagcctcttagagatttatctctaataaaggagcgacat
gatatcgttgagctgttagtacaaaataatgaactaagatccattcttagtgatgactac
ttaaaacgtataccggatctgcaacaactcgcgaagaaactggctaggaagaagtcggta
ttgcaagattgttacaaaatctacttgtgtgtatcatatttgccaaaattattggaacag
ctttcgcaagaagaaaatgtgacagcattgaaaacaatgataatagatccattaaaggaa
cttgtaaatgatatggataaatttcaacagctagtagaacagacaattgatttagatgct
gctgaaaagggggagtttatggtcaatccaggatttgcggatgatttaaaagtattaaaa
gatgcaatgactgaaacggaggaaaccatacagcaacaactcaataaggcagcaaatgat
ctttgcttagaagcaggaaaagtaataaagctagaaaataatcaacaattcggctattat
tttcgtatcacgttaaaggaagagaaaatacttaggaacaaaaagcattacaccattctg
gattctaataaagctggtataagattccgaaacaatagattaaatgaattgaatgatgat
tttacagatgccagaaataaatacatggagagacagaaagatgttattacagaaattgta
ggaattgcagctggctacagtggaacagtgcgtgctatcggtgacgtactagcatgcttc
gacgttctcacttcatttgcttctgcagcaataagtgctaataagatgtatgtgcgcccc
aagatggtctcaagcgaagaaggtgaactaaatctcactcaagttagacatccatgtttg
gagatgcaacaaggggttgactatattgctaatgatattgattttaagagagatcagtac
cgtttctgcattattactggtcctaacatgggaggtaaaagtacttatattagatctgtt
ggcgtagctgcattaatggctcatattggcagttttgtaccttgtgataaagcaactata
tctttactggattgcatattaactcgagtaggagctgatgattctcaattaaaaggattg
tcaactttcatgatggaaatgatagaaattgctgctattttaaaaacagctacatgtaat
tctcttgtaataatcgatgaactaggtagaggtacgtctacttacgaaggttgtggtata
gcgtggtcaatagcagagcatttggcgagagatattaaatcatactgtctatttgctacg
cacttccatgaaattaccaagttagccgaagaaatacccactgtaaagaatcaacatgtt
actgctcttgtcgaggacgataaattgacattactataccaagtaaagccaggcatttgc
gatcaaagttttggacttcatgttgctaagatggctaattttccattagatgtaatagaa
ttcgctaaaagaaaacaagccgaacttgagaactatgagggtatagcatttgaaggatct
gataacccccagaagaaacggaagattattcaggaaggtgaaattctcatttcgcaattt
ctcacaaaatgtaaagatttagaccagtctttacccgataccgccttagaaagtcaggta
tcatcgttgaaagaagacattctctcccacaagaatccttacattgaagcattactcgct
gcttcctaa
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