Solenopsis invicta (red fire ant): 105202581
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Entry
105202581 CDS
T03916
Name
(RefSeq) chromatin assembly factor 1 p55 subunit isoform X1
KO
K10752
histone-binding protein RBBP4
Organism
soc
Solenopsis invicta (red fire ant)
Pathway
soc03082
ATP-dependent chromatin remodeling
soc03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
soc00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
105202581
03083 Polycomb repressive complex
105202581
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
soc03036
]
105202581
Chromosome and associated proteins [BR:
soc03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
CAF-1
105202581
Histone modification proteins
HAT complexes
HATB complex
105202581
HDAC complexes
Sin3A-HDAC complex
105202581
Polycomb repressive complex (PRC) and associated proteins
PRC2.1
105202581
PRC2.2
105202581
Centromeric chromatin formation proteins
Kinetochore proteins
MIS16-MIS18 complex
105202581
Heterochromatin formation proteins
Other heterochromatin formation proteins
105202581
Chromatin remodeling factors
NuRD complex
105202581
NuRF complex
105202581
NuRF complex (fruit fly)
105202581
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_CDC20-Fz
WD40
CAF1C_H4-bd
WD40_Prp19
Beta-prop_CAF1B_HIR1
Beta-prop_RIG_2nd
Beta-prop_EIPR1
Beta-prop_TEP1_2nd
WDR55
Beta-prop_EML_2
WD40_WDHD1_1st
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_2nd
Beta-prop_EML
EIF3I
WD_LRWD1
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR19_1st
Beta-prop_DCAF12
WD40_RFWD3
ANAPC4_WD40
eIF2A
Beta-prop_RIG_1st
WD40_MABP1-WDR62_1st
Beta-prop_SPT8
NBCH_WD40
MIOS_WD40
Glyco_hydro_2
Beta-prop_IFT122_1st
Beta-prop_DCAF4
Motif
Other DBs
NCBI-GeneID:
105202581
NCBI-ProteinID:
XP_011169469
LinkDB
All DBs
Position
12:complement(19346573..19350899)
Genome browser
AA seq
532 aa
AA seq
DB search
MSVKSNLSFEVVSIKTEGSKMKIQLAEPIKVKPDKIETIKVDMAEPNKMEMAEPNIDTKD
VFMGTKDVPMEETELKTKGNKTVPTKIIRTKSNTLERKVVHKSEMVSINEQEGFDDAVEE
RIINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSD
EQNHLLIASVQLPNEDAQFDASHYDNEKGEFGGFGSVSGKIEIEIKINHEGEVNRARFMP
QNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPNLNGYLL
SASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMI
WDTRCNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFE
SHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSSEDAEDGPPELLFIHGGHT
AKISDFSWNPNEPWVICSVSEDNIMQVWQMAENIYNDEEPETPGSEIETGGS
NT seq
1599 nt
NT seq
+upstream
nt +downstream
nt
atgagtgttaaatcaaacttgagttttgaagttgtttcaattaagactgaaggatcaaag
atgaaaatccaattggctgaaccgattaaagtcaaaccagataaaattgaaacgattaaa
gtggatatggctgaaccgaataagatggaaatggctgaaccaaatatagatacaaaagat
gtatttatgggtacaaaagatgtgcctatggaagaaactgaattaaaaacaaaaggaaat
aaaactgtaccaactaagatcataaggaccaaatcaaatactcttgaaagaaaagttgtg
cacaagtctgaaatggtatcaataaatgaacaagagggttttgatgatgctgtggaggag
cgtattatcaacgaagagtacaaaatatggaagaaaaacacaccatttctatatgatctt
gtgatgacacatgccctggaatggccttctttgacggctcagtggttgccagatgtcacc
agaccagagggaaaagattactcgatccacaggttaatcctgggcactcatacttcggac
gaacaaaatcatttgctcatcgctagtgtgcagctgccaaatgaagacgcgcaattcgat
gcttcccattatgataacgaaaaaggtgaattcggcggatttggttctgtgagtggtaaa
atcgaaatcgaaatcaagatcaaccatgagggtgaggtcaatagagcgcgttttatgcca
caaaatccgtgcgtgatcgcgacgaagactccttcgagcgatgtgctcgtatttgattat
accaaacatcctagtaaaccagaccccaacggggaatgtcatccggacttgagactgcga
ggacatcaaaaggaaggctacggtctctcatggaatccaaatctcaatggatatttactt
agcgcgtccgatgatcacacaatttgtttgtgggacattaatgccacaccgaaggagaat
cgtgttatcgatgcaaaaactatttttacaggacatacagccgtggtcgaggacgtcgct
tggcatttgctccatgaatcactgtttggttcagtcgctgatgatcaaaagctcatgatt
tgggatactagatgtaacaatactagtaaaccaagtcatactgttgatgctcacactgct
gaggtgaactgtctgagtttcaacccatattccgaattcatcctggccactggtagcgcg
gataaaactgtggcgctttgggatttgcgaaatcttaagttgaagttgcactcatttgaa
tcgcacaaggatgagattttccaggtccagtggtctccacataacgagacaatattggca
agcagcggcacagacagacggttacatgtctgggatcttagcaagatcggtgaagaacag
tccagcgaggatgccgaggatggtccacctgaacttttgtttatacatggaggtcatacc
gcaaaaatcagtgacttttcgtggaacccgaatgaaccgtgggtcatatgttctgtatcg
gaggataacataatgcaagtgtggcagatggcagagaatatttacaacgatgaggaaccc
gagacacccgggagtgagattgaaactggcggctcataa
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integrated database retrieval system
