Solenopsis invicta (red fire ant): 105203307
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Entry
105203307 CDS
T03916
Name
(RefSeq) CCR4-NOT transcription complex subunit 10-B
KO
K12607
CCR4-NOT transcription complex subunit 10
Organism
soc
Solenopsis invicta (red fire ant)
Pathway
soc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
soc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105203307
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
soc03019
]
105203307
Messenger RNA biogenesis [BR:
soc03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
105203307
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
TPR_1
TPR_2
SRP_TPR_like
TPR_10
TPR_8
TPR_7
Motif
Other DBs
NCBI-GeneID:
105203307
NCBI-ProteinID:
XP_039302541
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Position
3:complement(51204..56983)
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AA seq
688 aa
AA seq
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MSEISETQSKDSGSVITEQERELAQNILSEFQNGSYVSCLTYLNKLECLRPTDLKVTHNK
VVVEYYKSDLKKTELTRKSLNAICGQISMTDSNETIDDVEKCVMRYNQAVLLYHTKQYSA
ALQIMTRLFAFIEPMEETLAHKVCLLLIELYIVTEQPDAALSILNYVESQFISTDSSKIS
AIDKDGIMKSIKEQREQKKDIVGDAATDAFKIKLLKYKARIYLLTHQLKLCKKEWKTLVS
LGIVNTSTIFLKANLEYLRGNYDKAMQFLNSKMKENLDFKLRGESLDVLFYNNMACLYLA
MGKPTLACSYLQRALHANDCALKSTQVKDSDSLSSQPLYTLGGDKHSELMYSLGVSFLYA
GKASKAFDCFTDVAQRVCNNPKLLLRMAECCIYNHKCSNEVDFNISKRCKDLVQKVMGSG
IHKKIILPTSLSKDIKYHSEGLSYAIPQPTLEFGYLCLKNALFLLSNTNESNVPVTTMAN
SVSLSLSGHNLGIQHVTLTSQATAIESFNLKISVLAASAYVSLCLGDYIFSLEYAKTLLS
FNKLPGAYKLLGNLYAAESLIFMDKISEALEYLKLENLQDLNTFMSVSEIQEKDKEKAEE
IVVKPVKAWYPTTVSTGIAVIRYNLAVAYAIRGELDKSGEILKQIWMSKEPDCDIPIQVI
MLALYIELQLDHADVSKSIIKQHCPQYR
NT seq
2067 nt
NT seq
+upstream
nt +downstream
nt
atgagcgaaatttcagaaacacagagcaaagacagtggctctgttataactgaacaagaa
cgtgagttggcacagaatatactgtcggagtttcaaaacggctcctacgtctcgtgcttg
acatatttgaacaagttggagtgccttcggccgactgatctcaaagttacgcataacaaa
gtcgtggtggaatattataaaagtgacttgaaaaaaactgagctgacacgaaagagtttg
aacgctatatgcggtcagatatcaatgacggattctaacgagactatcgacgacgtcgag
aagtgtgttatgagatataaccaagctgttttattatatcacactaagcaatatagtgct
gcgcttcaaattatgactaggctgtttgcctttatcgaaccaatggaggaaactttagcg
cataaagtttgtttgctactgatagagttatatatagtaacggagcaaccggatgcagca
ctgtcgatattaaattacgtggagagtcaatttatatccaccgacagttccaagatatct
gctattgacaaggatggaataatgaaatccattaaagagcaaagggagcaaaagaaagat
atagttggcgatgcagcgacggatgcatttaagattaaacttttgaaatataaagccaga
atatatctcctaactcatcaactgaaactctgtaaaaaagaatggaagacattagtttca
ttgggcatagtgaatacatcgaccatttttttgaaggctaatttggaatatttacgagga
aattacgataaggcaatgcaatttttgaattctaaaatgaaagaaaatttagattttaaa
ttacgtggggaatctttggatgttttgttttataacaatatggcatgcctatatctcgca
atgggcaagccgactttggcttgttcttatcttcagagagctttacacgcgaatgactgc
gcgttgaagagcacgcaggtcaaagactctgattctttatcttctcaaccattgtacacg
ctcggtggtgataaacattccgagttaatgtacagtttgggtgtatcattcttgtacgct
ggtaaagcgtcaaaagcctttgattgcttcacagatgtggcacaaagagtatgcaataat
cctaaactcttgctcagaatggcagaatgttgtatctacaatcataaatgttcaaacgaa
gtcgatttcaacatttcgaaacggtgtaaagatttggtgcagaaagttatgggttctggt
attcataaaaaaatcatattacctacgtctctttcaaaggatattaaatatcattcggaa
gggctatcctacgcaattccacaaccaacattggaatttggatatctatgtttgaagaat
gcattatttttactttcaaacaccaacgagtcaaacgtacctgtaacaaccatggcgaat
tcagtgtcattatcgttatctggtcacaatttaggcatccaacatgtaacgttaacgtca
caagctacagctatcgaatctttcaatttgaaaattagtgtcttggctgctagcgcttat
gtctccttgtgtctcggagattacatattttcgctcgaatatgcaaaaactctgttaagt
tttaacaagttacccggagcatataaattgctaggcaacttgtatgctgcagaaagttta
atatttatggacaaaattagtgaagcactcgagtatcttaagctagaaaatcttcaagat
ttaaatacatttatgtctgtgtcagaaattcaggagaaggataaggaaaaagcagaggaa
atcgtggtaaagcctgtaaaagcttggtatcctacgacagtttctacaggcattgctgtg
atacgttacaacttggctgtggcttatgccatacgaggcgaactagacaaatctggagaa
atcttaaaacaaatatggatgtcaaaagaaccagattgtgatatacctatacaagtgata
atgttggccctgtatatagagctacaattagatcatgctgacgtttccaaatcaataata
aaacaacattgtccacaatatcgttag
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