Solenopsis invicta (red fire ant): 105203762
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Entry
105203762 CDS
T03916
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
soc
Solenopsis invicta (red fire ant)
Brite
KEGG Orthology (KO) [BR:
soc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
soc03016
]
105203762
Enzymes [BR:
soc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
105203762
Transfer RNA biogenesis [BR:
soc03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
105203762
Prokaryotic type
tRNA splicing ligases
105203762
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-GeneID:
105203762
NCBI-ProteinID:
XP_025987102
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All DBs
Position
1:complement(21924197..21929552)
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AA seq
506 aa
AA seq
DB search
MVVRQYQDELKYLEKINEYSWRIKKGFQPNMKVEGVFYVNNTLERLMFDELRNACRPGAI
GGFLPGMKQIANVAALPGIVWRSVGLPDVHSGYGFAIGNMAAFDMDDPKSIVSPGGVGFD
INCGVRLLRTNLYESDVLPVKEQLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWS
LREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQVVDEIYD
KWAAYKMGIEEKGQICVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQLACAHIQ
SQEGQDYLKAMAAAANFAWVNRSSMTFLSRQAFAKQFNSSPDDLDMHVIYDVSHNIAKIE
EHIVEGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEQGM
KETFGSTCHGAGRALSRAKSRRNLDYTQVLEKLEELGISIRVASPKLVMEEAPESYKNVT
DVVNTCHAAGISKKCIKLRPIAVIKG
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atggttgtaagacaatatcaagatgaacttaaatatttggaaaaaattaatgaatattct
tggagaatcaaaaaaggctttcaacctaacatgaaggttgaaggagttttttatgtgaac
aacacattggagcgtttgatgtttgatgagttgcgcaatgcgtgtcggccaggtgcaatt
ggtggttttcttcctggaatgaaacagattgctaacgttgcagcactacctggtattgta
tggagatccgttggattaccagatgtacactctggatatggttttgctattggtaatatg
gcagcatttgacatggacgatccaaaatcaattgtatcacctggtggtgtaggctttgat
attaattgtggtgttcgtcttttacgaacaaatttatacgagagtgatgttttacctgta
aaggagcaacttgcacaaagtatgtttgatcatattccagttggtgttggatctaaagga
attataccaatgaatgcacgggatttggaagaagcgttagaaatgggaatggattggtct
ttgagggaaggttatatttgggctgaggataaagaacattgtgaagaatatggaagaatg
cttaatgctgatccatcaaaagtatcaatgagggctaagaaacgtggacttccgcaatta
ggtacgttaggagctggaaaccattatgcagagattcaagtcgtagatgagatatatgat
aaatgggctgcatataaaatgggtattgaagaaaaaggacaaatttgcgttatgattcat
tcgggaagtagaggatttggtcatcaagttgctacagatgcacttgtgcaaatggaaaaa
gctatgaaacgtgataacattgaaaccaatgataggcagcttgcatgtgctcatattcaa
tctcaagaaggccaagattatttaaaagcgatggcagctgctgccaattttgcatgggtt
aataggagttctatgacattcctcagccgccaggcatttgcaaaacaattcaactcgtcc
cccgatgacttagatatgcatgttatttatgatgtctctcataatattgccaaaatagaa
gagcacatagttgagggaaaacagaagacacttttagttcacagaaagggatcaacaaga
gcctttccaccacatcatcctttgatacctgtagattatcagttgacaggccaaccagtt
ttaatcggtggtacaatgggtacatgcagttatgttctaactggtacagaacagggtatg
aaagaaacatttggatcaacatgtcatggtgctggtcgtgctctttcaagagcaaagtca
cgtaggaacttggattatacgcaagttttagaaaagttagaagagttaggcatatctatt
cgggttgcttcgccaaaattagttatggaagaagcaccagaatcttataaaaatgtaaca
gatgttgttaatacttgtcacgcagctggcatttccaaaaaatgcattaaactgcgaccg
attgcagttattaaaggataa
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