Solenopsis invicta (red fire ant): 105204149
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Entry
105204149 CDS
T03916
Name
(RefSeq) general transcription factor IIH subunit 1
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
soc
Solenopsis invicta (red fire ant)
Pathway
soc03022
Basal transcription factors
soc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
soc00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
105204149
09124 Replication and repair
03420 Nucleotide excision repair
105204149
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
soc03021
]
105204149
03400 DNA repair and recombination proteins [BR:
soc03400
]
105204149
Transcription machinery [BR:
soc03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
105204149
DNA repair and recombination proteins [BR:
soc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
105204149
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PH_TFIIH
BSD
PH_SLA1
Voldacs
Motif
Other DBs
NCBI-GeneID:
105204149
NCBI-ProteinID:
XP_025997161
LinkDB
All DBs
Position
3:15929084..15961494
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AA seq
562 aa
AA seq
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MSTMTTSSEDVLMQVSQVRYKKGDGTLYVMNERIAWMLDNRDTVSVSHKYADIKLQKISP
EGKSKIQLQVVLHDGTSSTFHFVNKNGQEAQIKDRDDVKELLQQLLPKFKRKVDKELEEK
NKTLQEHPMLLQLYRDLVITQVISSEEFWSQYAAEYTQAKKIQRQEIGVNSAFLADIKPQ
TDGCNGLKYNLTVDVIECVFKTYPAVKKKHQENVPHKMSESDFWTKFFQSHYFHRDRINA
GTKDLFTECAKIDDQELKKDLQTGINDPLVDITSFEDQSLDENYGSGCSKSDKMSGNIVH
QNMIKRFNQHSIMVMKASTAKQSMQTNQPQLNGSTPSASKIVNNELDDGPKTKKRRIQEK
ITYDDLDKSCDRNTNNETPLNLMHIDRYLHGPVSGYGNTEPTSEELFVTLSHLKKEASGW
IAGSTLPRQVTTSLVSPAAAVSALGELTPGGSLMKGFREESLGQLIPKDLEKELCNVYVC
ACELLRHFWRSFPPTTPQLEEKAIRMHEALHRFHSAKLKPFEDRVQREFSAISQHLTSHL
NQLLTTAYRKFAVWQQRKLQMR
NT seq
1689 nt
NT seq
+upstream
nt +downstream
nt
atgtccaccatgactacatcttcagaagatgtcttgatgcaagtaagtcaagtgcgttat
aaaaaaggagatggtactttgtacgtgatgaatgagcgaatagcgtggatgcttgataac
agggatactgtatctgtgagccataaatacgctgatattaaattgcaaaaaatatcaccc
gagggaaaatcaaaaatacaactacaggtagtattacacgatggtacctcatctacattt
cattttgtaaataaaaatggacaagaagcacaaattaaagatcgtgacgatgtaaaagag
ttattgcaacagctgctaccaaaatttaagcggaaagttgataaggaattggaagaaaag
aataagacccttcaagaacatcctatgttgcttcaattatatcgcgatctggtaatcacg
caagttatatcatctgaagaattttggtcgcaatatgctgcagaatacacacaagccaag
aagattcaacgtcaagaaataggtgttaatagtgctttcttggcggatattaagccacaa
accgatggttgcaacggattaaaatacaatttaactgtcgatgtgatagaatgtgtattt
aagacttacccagctgtgaaaaagaagcatcaagaaaatgtgcctcataagatgtcagag
tctgatttctggacgaaattctttcaatcacattactttcatagagaccgtatcaatgct
gggaccaaggatctttttaccgaatgtgccaaaatagatgatcaagaacttaaaaaggac
cttcaaactgggataaatgatccgttggtagatatcacttccttcgaggatcaatcactg
gatgaaaattatgggagtggatgtagtaaatcagacaaaatgtcgggaaatattgtacat
caaaatatgattaaaagatttaatcaacatagcataatggttatgaaagctagcactgcc
aaacagtcgatgcaaactaatcaaccgcaattgaatggatctacaccgtctgcaagtaaa
atagtaaataatgaactagatgatggaccaaagactaaaaaacgtagaatacaggaaaag
ataacttatgatgatcttgacaagagctgtgacagaaatacaaataatgaaactccatta
aatctgatgcatatagatagatatttacatggacctgtatcgggatatggaaatacagaa
ccaacttcagaagagttgtttgttacattaagtcatttaaagaaagaggcttctggatgg
atagctggaagtacgttaccacgacaagtgacaacttctttagttagtccagccgcagca
gtgtcagctttaggtgaattaacgcctggtgggtctttgatgaaaggcttccgagaagaa
agtcttggacagttaataccgaaggatttagaaaaggaattatgtaacgtatatgtgtgt
gcatgcgagctgttgaggcacttttggcgaagttttccgccaacaacaccacaacttgaa
gaaaaagcaattagaatgcatgaagctctacatagatttcattccgctaaactaaaaccc
tttgaagatcgtgtgcaaagagaattctccgcgatcagtcaacacttgacgagtcatctc
aatcaattgttaaccaccgcctacaggaagttcgcggtgtggcaacaacgaaaactgcaa
atgaggtag
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