Solenopsis invicta (red fire ant): 105204175
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Entry
105204175 CDS
T03916
Name
(RefSeq) pre-mRNA-splicing factor syf1 homolog
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
soc
Solenopsis invicta (red fire ant)
Pathway
soc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
soc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105204175
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
soc03019
]
105204175
03041 Spliceosome [BR:
soc03041
]
105204175
Messenger RNA biogenesis [BR:
soc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
105204175
Spliceosome [BR:
soc03041
]
Complex B
Other components
Prp19-related factors
105204175
Complex C
105204175
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_2
TPR_8
TPR_15
TPR_12
RPN7
Mad3_BUB1_I
PPR
TPR_10
DHR-2_Lobe_A
ARM_TT21_C
SNAP
Motif
Other DBs
NCBI-GeneID:
105204175
NCBI-ProteinID:
XP_025995638
LinkDB
All DBs
Position
1:32967899..32975109
Genome browser
AA seq
839 aa
AA seq
DB search
MLERQDDEGNLYFFNEEDLPYEEEILRNPYSVKHWQRYIDHLKNTNSTNLNVVYERALKE
LPGSYKLWYNYLRQRVSQLKGRCITDPLYEDVNNAFERALVFMHKMPRIWMDYCTLMTEE
CYITRTRQVFDRSLRALPITQHHRIWPLYIHFLKKHNVYETAVRVFRRYLKLAPEDTEEY
IEYLISIGRLDEAAVKLAQIVNQDDFVSKHGKSNHQLWNELCDLISKNPSKIKSLNVDAI
IRGGLRRYTDQLGPLWNSLADYYVRSGLFERARDIYEEAIQTVSTVRDFTQVFDAYAQFE
ELSLKKLIEEAARNPTEEDDIKLELRLARLEHLMERRLLLLNSVLLRQNPHNVAEWHKRV
KLYEGQPHEIINTYTEAVQTVQPQLAVGKLHTLWVAFGKFYEENGQIEDARVVFEKATHV
PYTKVDDLASVWCEWAEMEIRHGNCKEALKLMHRATTMPARKVAYHDETETVQMRLYKSL
KVWSMYADLEESFGTFKTCKAVYDKIIDLKIATPQIIINYGLFLEENNYFEEAFRAYEKG
IALFKWPNVYDIWNTYLTKFLKRYGGTKLERTRDLFEQCLEHCPPKYAKALYLLYAKLEE
EHGLARHAMSVYERATNAVLPEERFDMFNIYIKKAADIYGVPKTRQIYEKAIEVLNDENT
REMCLRFAEMETKLGEVDRARAIYAHCSQICDPRVTSSFWQIWKEFEVRHGNEDTMREML
RIKRSVQAMYNTQVNMMSAQMLNNANQVSDIPMDAMRLLESKITSDNAADIKGGIKFVRG
VTEKDGKADSHVNNPDEIDIDIDDENDNTEEVEEDIPIEKQTIPSQVFGSLKAAQAEED
NT seq
2520 nt
NT seq
+upstream
nt +downstream
nt
atgttggaacgtcaggatgatgaaggaaatttatatttctttaatgaggaagacttacca
tacgaagaagaaattttacgaaatccatattcagtgaaacattggcaacgctatatcgat
catcttaaaaatacaaatagtacgaatttaaatgttgtatatgaacgagcattgaaagaa
cttccaggcagttacaagctgtggtataattatcttcgacaacgtgtgagtcaattaaag
ggtcgatgtataacggatccattgtacgaagatgttaataatgcatttgaacgtgcatta
gtatttatgcacaaaatgccacgtatatggatggattattgtacgctaatgaccgaagaa
tgttatataacacgaactcgtcaagtgttcgatcggtctcttagagcgcttcctatcacg
cagcatcatcgtatatggccattgtatattcatttcttaaagaaacacaatgtttatgaa
actgctgttagagtttttaggagatatttaaagctagcacctgaagatacagaagagtat
atcgaatatttgatatcaattggaagactcgacgaagctgctgtaaaacttgcccagatt
gtcaatcaggatgattttgtatcaaagcatggaaaatctaatcatcaattatggaacgaa
ttgtgcgatttaatatcaaaaaatccttccaagataaagtccttgaatgtagatgcaatt
attagaggcggcttaagacgttatacagatcaattgggacctttatggaattcattagca
gattattacgtccgaagtggtcttttcgaaagggcaagggatatttatgaagaagctata
cagactgtatccactgtcagagattttacacaagtttttgatgcttatgcgcaatttgaa
gaacttagtcttaaaaagctcatagaggaagcagcaagaaatcctaccgaagaagatgac
ataaagttagaattgagattggcacgattggaacatcttatggaaaggagactactattg
ctcaattctgttttattacgacaaaatccacataacgtagcagaatggcataaaagagta
aaactttacgaagggcaaccacatgagataattaatacgtatacagaagcagtgcagaca
gtgcaaccacaattagcagttggtaaattgcacacattatgggtcgcgtttggcaaattt
tatgaggaaaatggacaaatagaagatgctagagtggtatttgaaaaggcaactcatgtt
ccatacactaaggtagatgatcttgcctcggtatggtgcgaatgggcagaaatggaaatt
agacatggaaattgcaaagaagctttaaaacttatgcatcgtgctactacaatgccagct
agaaaagtagcatatcatgatgaaacagaaacagtacaaatgagattatacaaatcttta
aaagtatggtctatgtatgcagacttggaagaaagttttggaacattcaagacctgtaaa
gcagtgtacgacaaaataattgatttgaaaattgcaactccacaaattatcatcaattac
ggattgtttttagaggaaaacaattactttgaagaagcatttagggcatatgaaaaaggt
attgcgttatttaagtggcctaatgtatatgatatttggaacacatatcttacaaaattt
ttaaaacgttacggtggtacgaaattagaacgtaccagagatttatttgagcaatgtttg
gaacattgtccaccaaagtatgctaaagccttatatttgttatacgcaaaactagaagaa
gaacatggtttagcgagacacgccatgtctgtatatgaacgtgcgacgaatgccgtcctc
ccggaagaaagatttgatatgttcaatatatacataaagaaagctgctgatatatatggt
gtgccgaaaacccgacaaatatacgaaaaggctatagaagtcttgaacgatgagaataca
agagaaatgtgtttacggtttgcagaaatggagaccaaattaggagaagtggatagagct
agagccatatacgcgcattgtagccaaatatgtgacccaagagttacgtccagtttttgg
caaatttggaaagaatttgaagtcaggcatggaaacgaggatacaatgcgtgaaatgctt
cgaatcaagcgtagtgtacaagctatgtataacactcaagtaaacatgatgtctgcacaa
atgttgaataacgccaatcaagtatcagatattccaatggatgctatgcgtttgttggaa
agtaaaattacatcagataatgctgctgatatcaaaggaggtatcaaatttgtacgtggt
gtaacagaaaaggatggtaaagcagattctcatgtaaataatccagacgagattgatatc
gacatagatgatgaaaatgacaacacggaagaagtagaagaagatataccgattgagaaa
caaactataccatcacaagtatttggtagtttgaaagcggcccaagctgaagaggattga
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