Solenopsis invicta (red fire ant): 105204874
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Entry
105204874 CDS
T03916
Name
(RefSeq) pre-mRNA-processing-splicing factor 8
KO
K12856
pre-mRNA-processing factor 8
Organism
soc
Solenopsis invicta (red fire ant)
Pathway
soc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
soc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105204874
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
soc03041
]
105204874
Spliceosome [BR:
soc03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
105204874
Complex C
U5 SnRNP specific factors
105204874
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
105204874
NCBI-ProteinID:
XP_011172427
LinkDB
All DBs
Position
16:complement(6834018..6843269)
Genome browser
AA seq
2371 aa
AA seq
DB search
MSIPPYLLSPNPWATMMAQQQAQIAAQVHAQAAAHAQAAHHAHMQAIAGPPLPQIPKQPE
VLSEDKLQEKAQKWQQLQSKRFAEKRKFGFVDAQKEDMPAEHIRKIIRDHGDMSSRKYRH
DKRVYLGALKYMPHAVMKLLENMPMPWEQIRDVKVLYHITGAITFVNEIPWVIEPVYIAQ
WGTMWIMMRREKRDRRHFKRMRFPPFDDEEPPLDYADNVLDVEPLEAIQIELDSEEDESV
ASWFYEHKPLVGTKHVNGSTYRRWNLTLPQMATLYRLANQLLTDLVDQNFFYLFDPKSFF
TAKALNMAIPGGPKFEPLVKDSNAADEDWNEFNDINKIIIRQPIRTEYRIAFPYLYNNMP
HFVHLSWYHAPNVVYIKTEDPDLPAFYFDPLINPISHRNSLKTMEPQIEDDEDFVLPGDV
QPFLQEIPLYTDNTANGIALLWAPRPFNTRSGRTRRAIDIPLVKSWYREHCPPGQPVKVR
VSYQKLLKYFVLNALKHRPPKPQKKRYLFRSFKSTKFFQTTTIDWVEAGLQVCRQGYNML
NLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLCREILRLTKLIIDSHVQY
RLNNVDAFQLADGLQYIFAHVGQLTGMYRYKYKLMRQIRMCKDLKHLIYYRFNTGPVGKG
PGCGFWAPGWRVWLFFMRGITPLLERWLGNLLSRQFEGRHSKGVAKTVTKQRVESHFDLE
LRASVMHDIVDMMPEGIKQNKARTILQHLSEAWRCWKANIPWKVPGLPIPIENMILRYVK
MKADWWTNTAHYNRERIRRGATVDKTVCKKNLGRLTRLYLKAEQERQHNYLKDGPYISPE
EAVAIFTTSVHWLESRRFAPIPFPPLSYKHDTKLLILALERLKEAYSVKSRLNQSQREEL
GLIEQAYDNPHEALSRIKRHLLTQRAFKEVGIEFMDLYSHLIPVYDVEPLEKITDAYLDQ
YLWYEADKRRLFPPWVKPADTEPPPLLVYKWCQGINNLQDVWDVSEGECNVLLESKFEKL
YEKIDLTLLNRLLRLIVDHNIADYMTAKNNVVINYKDMNHTNSYGIIRGLQFASFIAQYY
GLVLDLLVLGLQRASEMAGPPQMPNDFLTFQDVASETAHPIRLYCRYVDRIHLFLRFSAD
EARDLIQRYLTEHPDPNNENIVGYNNKKCWPRDARMRLMKHDVNLGRAVFWDIKNRLPRS
TTTIQWENSFVSVYSKDNPNLLFNMSGFECRILPKCRTTHEEFTHRDGVWNLQNEITKER
TAQCFLRVDDESLQRFHNRVRQILMASGSTTFTKIVNKWNTALIGLMTYFREAVVNTQEL
LDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPKELGGLGMLSMGHVLIPQSDLRWSK
QTDVGITHFRSGMSHDEDQLIPNLYRYIQPWESEFIDSQRVWAEYALKRQEANAQNRRLT
LEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRIRTEFKQYQVLKQNPFWWTHQRHDGKL
WNLNNYRTDMIQALGGVEGILEHTLFKGTYFPTWEGLFWEKASGFEESMKYKKLTNAQRS
GLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMHGKIPTLKISLIQIFRAHLWQK
VHESIVMDLCQVFDQELDALEIETVQKETIHPRKSYKMNSSCADILLFSAYKWNVSRPSL
LADSKDVMDNTTTQKYWIDVQLRWGDYDSHDIERYARAKFLDYTTDNMSIYPSPTGLLIA
IDLAYNLHSAYGNWFPGCKPLIQQAMAKIMKANPALYVLRERIRKALQLYSSEPTEPYLS
SQNYGELFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHT
SVWAGQKRLGQLAKWKTAEEVAALIRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFPNIVI
KGSELQLPFQACLKVEKFGDLILKATEPQMVLFNLYDDWLKTISSYTAFSRLILILRALH
VNTERTKVVLKPDKTTITEPHHIWPSLSDDEWIKVEVQLKDLILADYGKKNNVNVASLTQ
SEIRDIILGMEISAPSAQRQQIAEIEKQTKEQSQLTATTTRTVNKHGDEIITATTSNYET
QTFSSKTEWRVRAISATNLHLRTNHIYVSSDDIKETGYTYILPKNVLKKFVTISDLRAQI
AGYLYGISPPDNPQVKEIRCIVMAPQWGTHQTVHLPNTLPNHQYLKEMEPLGWIHTQPNE
LPQLSPQDISTHARIMAENSIWDGEKTIVITCSFTPGSCSLTAYKLTPSGFEWGKQNTDK
GNNPKGYLPSHYEKVQMLLSDRFLGFFMVPSQGSWNYNFMGVRHDPNMKYELQLANPKEF
YHEVHRPAHFLNFSSLEDGDGVGADREDMFA
NT seq
7116 nt
NT seq
+upstream
nt +downstream
nt
atgtctattccaccatatttgctgagcccaaatccatgggccacgatgatggcccagcaa
caagctcagatagcggcccaggtgcatgctcaggctgcggctcatgcgcaagcagctcat
catgctcatatgcaggctatagctggaccgccgttgcctcaaatacctaaacagccagag
gtcttgtccgaggataaacttcaggaaaaagcgcaaaaatggcagcagttgcaatcgaag
cgatttgcggagaagagaaaatttggctttgtagatgctcagaaggaagatatgccagct
gagcatataagaaagatcatcagagatcatggtgatatgagcagtagaaaatacagacat
gataagcgtgtttacttaggtgcattaaagtacatgccacatgctgttatgaaactattg
gaaaatatgcccatgccctgggaacaaataagagatgttaaagtcttgtatcatattact
ggggctattacatttgtcaatgagattccttgggtcatagaacctgtatacatagctcaa
tggggtactatgtggattatgatgagacgagaaaaaagagatcgtaggcatttcaagaga
atgcgattcccaccttttgatgatgaagagcctcctctcgattatgcagataacgttcta
gatgttgaaccattagaagctatacaaattgaacttgattcagaagaagatgagtctgtg
gcatcatggttttatgaacataaacctttagttgggacaaaacacgttaatggatctaca
taccgaaggtggaatctgacgctaccgcaaatggccactctgtatcgtttggctaatcaa
ttgttaaccgacttggtagatcaaaatttcttctatctttttgatccaaaatcattcttc
accgcaaaagccctaaatatggctattcctggaggaccgaaattcgaaccgttagtaaaa
gattcaaacgcggcggatgaagattggaacgaatttaacgacataaataagattatcatt
cggcagcctatcagaacagaatataggattgcatttccttatttatacaataatatgcct
cattttgtacatctttcatggtatcatgcaccaaatgttgtgtacataaaaactgaagat
ccagatttacctgcattctacttcgatccattaattaatccaatttctcatagaaattca
ttaaagacgatggaaccacaaattgaagatgatgaagactttgttttacctggcgacgta
caaccgttccttcaagaaatacctctttatactgataacacagctaatgggatagcactc
ctatgggcgccaaggccgtttaacacacggtccggaagaacgagaagagctatcgatatc
ccattagtcaagtcgtggtacagagagcattgcccacctggacaacctgtaaaagtgcga
gtcagttatcagaaattgctgaaatactttgtgctgaacgctttgaagcacagaccaccg
aaaccacagaagaaacgctatttattccgttcatttaagtctaccaagttcttccagact
acgacgatagactgggtagaagccggtctgcaggtgtgtcgtcaaggatacaacatgttg
aatctgttgattcatcggaaaaatctcaattatcttcatttagattacaattttaatttg
aaacctgtcaaaacgcttacgacaaaagagagaaagaaatcacgctttggtaacgctttc
catctgtgccgtgagattcttcgtttgacgaagcttataatcgattctcacgttcagtat
cgactgaacaacgtggacgcctttcaacttgctgatggattgcaatacatctttgcgcac
gtcggtcagttgaccggcatgtatcgatacaagtacaaattaatgcggcaaattaggatg
tgtaaagatttgaaacatttaatctattaccgtttcaataccggaccggtcggtaaagga
cctggatgtggattctgggcacctggctggcgtgtctggttgttcttcatgagaggtatc
actccgctgttggagagatggttgggtaatctattgtcaagacaatttgaaggtcgccac
tcgaaaggcgtggcaaagacggtgacgaagcaacgagttgaatcgcacttcgatctcgaa
ttacgagcatccgttatgcatgatatagtggacatgatgcctgaaggaataaagcagaac
aaggcacggactattctgcagcatctgagtgaggcctggcgttgttggaaggcgaatatc
ccatggaaggtgccaggtttaccaattccaattgagaacatgatattgcgttatgtcaag
atgaaagctgactggtggactaacacagctcattacaatcgagagagaattcgacgcggc
gccacagtggataaaaccgtgtgcaagaagaatcttggtcgtttgacgcgcctctacttg
aaagctgagcaagaacgacagcacaattatttgaaagacggtccgtacatatcgccggaa
gaagctgtagctatattcactacttcggtgcattggctagagtctcgaagattcgcgccg
atacctttcccacccttatcctacaaacatgacacaaaacttttaatattggctttggaa
cgtttgaaagaagcctatagcgttaaatctaggttaaatcaaagtcaacgagaagaacta
ggtttgatagagcaagcgtacgacaatccacacgaagcattatccagaattaagagacat
ttgctcacacagagagcctttaaggaagttggcatcgaattcatggatctctatagtcat
ttgattcctgtgtacgatgttgagccgctcgaaaagatcacggatgcttatctcgatcaa
tatctgtggtacgaggcagacaagaggcgattgttcccaccatgggtgaaaccggctgac
acagaaccgccaccgcttctcgtctacaagtggtgccagggtattaacaatctccaggat
gtgtgggatgtcagcgaaggcgagtgcaatgtgttactcgaatcaaaattcgagaaactg
tacgagaagatcgatctcacgctactcaacagattgttgcgtctaatagtcgatcataat
atcgccgattacatgactgcaaagaataacgtagtcatcaattacaaagatatgaatcat
accaacagttacggcattatcaggggattgcaatttgcgtcctttatcgcccaatactat
ggactggtattagatttgcttgtgctaggtctccaacgagccagcgagatggccggcccg
ccgcaaatgccgaatgactttttaacattccaggatgtcgcctctgaaacggcgcatcct
attcgtttgtattgtcgctacgtcgatagaatacatttgttcctgcgcttctctgccgac
gaagcgagagatcttatccagcgttatctcactgagcatcctgatccgaacaatgagaac
atcgtcggctacaataataagaagtgttggccgcgagacgctcgtatgagactgatgaag
catgacgtgaacctgggtcgtgctgttttctgggacattaagaatcgactaccacgttcc
accaccactattcaatgggagaatagttttgtcagcgtctatagcaaggacaatcctaat
ctattgttcaatatgagtggttttgaatgcagaattctacccaagtgcagaacaactcac
gaagagtttacacatcgggatggcgtctggaatctccagaacgaaatcacaaaggagaga
acagcgcaatgcttcttgcgtgtcgacgatgaaagtttgcaacgattccataatcgtgtc
agacaaatcttaatggcctcaggctcgactactttcacgaaaattgtgaacaagtggaac
accgcattgatcggtttaatgacatatttcagagaggcggtggtaaacacccaggagtta
ttggatctattagtcaagtgcgagaataagattcagacacgaattaaaatcggactgaat
tccaaaatgccgtcgcggttcccacctgtcgtcttttatacacccaaggaattgggcggt
ctgggaatgctgtcaatgggtcacgtgttaataccgcagtccgacttgagatggtcgaaa
caaaccgatgtgggcatcactcacttccgttcgggtatgagtcacgacgaagatcaactg
attccaaacttgtaccgttacatacagccgtgggaatcagaatttatcgattctcaacgc
gtctgggcagagtacgctctgaagcgacaggaggccaatgcccaaaatcgcaggctcact
ctggaggaccttgaggacagctgggaccgcggtattcctagaataaatacactatttcag
aaggatcggcacacgctggcctatgacaagggttggcgcattcgaacagagtttaaacag
tatcaagtgttgaaacagaatccgttttggtggactcatcagcgtcacgacggcaaatta
tggaatctgaataactaccgaactgatatgattcaagcgctcggcggtgtcgagggcatt
ctggagcatactctcttcaagggcacctatttcccgacgtgggaaggtctcttctgggag
aaggcgtctggtttcgaagagtccatgaaatacaagaaactgacgaacgctcaacgttcc
ggtctcaaccagattcccaatcgtcgattcactctatggtggtcgcctactattaatcgc
gccaacgtttacgtcggtttccaggtgcaacttgatttaacgggcatattcatgcacgga
aaaataccgaccctaaaaatctcgttgatccagatattccgcgctcacttgtggcaaaag
gtacacgagtccattgtgatggatctttgccaggtgttcgatcaagagttggacgcactg
gaaatcgaaaccgtgcagaaggagacgattcatcctcgaaagtcttacaagatgaactcc
tcgtgcgctgacattctactattctccgcctataaatggaatgtgtctcggccatctctt
ctcgctgattccaaagatgtcatggataatacgaccacgcaaaagtattggatcgatgtt
caactgagatggggcgactatgattcccacgacatcgagcggtatgctcgtgcgaaattc
cttgattatactacggacaacatgtctatttacccatcacccactggtctccttattgcc
attgatctggcatacaacttgcatagcgcctatggtaattggttcccaggctgcaaaccg
ctcatacagcaagccatggcgaagatcatgaaagcgaatccagctttgtatgtcttacgt
gaacgcattcgcaaagcgttacagttgtattcgtcggaaccgaccgagccttacctctca
tcacaaaactatggcgagctcttctccaaccaaatcatatggttcgtcgacgacacaaat
gtgtatcgtgtgactatccacaaaacttttgaaggcaatttaacgacgaagccgataaac
ggcgcgatcttcatctttaatccgcgcaccggacaactctttctgaagattattcacacc
tctgtatgggcgggccaaaagcgtctgggtcagctagccaagtggaaaactgctgaagaa
gttgctgcgcttattcgctctctaccagtggaggagcaaccgaagcagattatcgttacc
agaaagggaatgttagatccactggaagtgcacttgctggactttcccaacatagtcata
aagggctcggagttacaattaccattccaggcgtgtctcaaagtggagaaatttggcgat
ttgattttaaaagcgaccgagccgcagatggtattgtttaatctttacgacgactggttg
aagaccatctcatcttataccgcgttctcgcgactgattctgattttgcgcgctctacac
gtcaacaccgagagaaccaaagtcgttctcaaacctgacaagactaccatcaccgaacca
catcacatctggccctcgctgtcggacgatgaatggattaaagtggaagtgcagctgaag
gatctgattttagcggactacggcaagaagaacaacgttaatgtcgcatcgctcacgcaa
tccgagattcgcgatatcattttgggcatggaaataagcgctccgtctgcgcagcgacaa
caaatcgccgagattgaaaagcaaactaaagagcaaagccagttgaccgctaccaccacg
cgaacagtgaacaagcatggtgacgagatcattactgcgactacatccaattacgagaca
cagactttcagctcgaaaactgaatggcgagtgcgtgccatctctgcaaccaatcttcat
ctcagaacgaatcacatctacgtttcgtccgatgatattaaggagaccggctacacttat
atcttacctaagaacgtattgaaaaaattcgtcaccatttccgatctgcgagcacaaata
gctggctatttatacggcatcagtccacctgataatcctcaggtgaaggaaatcagatgc
attgtaatggcacctcagtggggaactcaccagaccgttcatttgccaaatacgctacct
aatcatcaatatttgaaagagatggagccattaggatggatacacacgcagccgaacgag
ctgccacagctctcgccgcaggatatatctactcacgcccgaattatggcggagaattcc
atctgggacggcgaaaagactatcgttatcacttgcagttttacccctggttcctgctct
ctcacagcgtacaagttgactcctagtgggttcgagtggggcaagcagaacacagataaa
ggcaataatccgaagggttatctacccagtcattacgagaaagtacaaatgcttctgtcc
gatcgtttcctcggcttctttatggtgcccagtcaaggctcgtggaactacaactttatg
ggcgtgaggcatgacccaaacatgaagtacgagttacaactggcgaatccaaaggagttc
taccacgaagtgcataggccggctcatttcctcaacttctcaagtttggaagacggtgac
ggcgttggagctgatcgcgaagatatgtttgcgtaa
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integrated database retrieval system
