Solenopsis invicta (red fire ant): 105205121
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Entry
105205121 CDS
T03916
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1 isoform X1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
soc
Solenopsis invicta (red fire ant)
Pathway
soc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
soc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
105205121
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
soc03021
]
105205121
Enzymes [BR:
soc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
105205121
Transcription machinery [BR:
soc03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
105205121
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
DUF7695
Motif
Other DBs
NCBI-GeneID:
105205121
NCBI-ProteinID:
XP_011172718
LinkDB
All DBs
Position
2:complement(22447536..22500939)
Genome browser
AA seq
1693 aa
AA seq
DB search
MMSKYHRPRLTPKHQDSQHLLFSVFTANDIRNLSVTKIRTPLCYNILGHPLKGGLYDPSL
GTTRNNSEICSTCGYNSSKCPGHFGHVELPVPVVNPLFHKALSMLLKLSCLSCFTLQVPP
YIKLLLSAKLKLLYQGHLNDLDILDQEVTSIISSTQKEEERTECIRNVIDNYMQNFFNRI
RYSQTELQDYENQANVKNIIMQWHVYVESMLKQYVRNNKAGICVNCHDGLPKISTLQNKI
MISNKKVASPRATLAHKLETVMIMPDQSKEYLRRLWENERDFLKIIVPCLELVDIEYPTD
VFFFEVIPVLPPIVRPVNFLNGQMIEHPQTYIYKSIIQDCLVLRNIIQTIQDGGTDHLPQ
EGRLVFEQIKGITPIEKLHNAWQALQHDVNHLMDRDMNKTPESINGQGLKQILEKKEGII
RMHMMGKRVNFAARSVITPDPDLNIDEIGIPEAFACKLTYPTAITPWNVVELRQLVLNGP
DVHPGAVMVENEDGSIQAISSRDSTQREAIAKRLLTTSDRTNESFAGVKVVHRHLQNGDV
LLINRQPTLHKPSIMAHKARVLKGEKTLHLHYANCKAYNADFDGDELNAHFPQNELARSE
SYNIANVSNQYLVPKDGTPLSGLIQDYMVSGVRLTTRGRFFSKTHYTQLVYIALTQDNII
LLPPAIVKPKMLWSGKQILSTVMINIIPSHKARINLISSTKISAKEWQTETPRHWKCGTE
FKNLTTMSETEVIIRHGELLCGVLDKIHYGATPYGLIHCIYELYGGICASKMLSAFGKLF
RMFLQCDGFTLGVEDILITRKIDEKRKEIISNCRKVGETIQRSMVKVSNDAPMNEIQAKM
EESYWNNSKFRAQVDHKYKSALDVYTNDINKVCLLTGLLKKFPNNNLQLMVQSGAKGSTV
NTMQISCLLGQSELEGKRPPLMISGKSLSSFPAYDPTPRAGGFIDGRFMTGIRPQECFFH
CMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLIVNYDATVRDYDGSLIQFYYGEDGLDIP
GSRFLKKEQMEFLVDNKDAIIDTKLLQCLKTDNEEIMKTMKKIKKWESKNGSSLRKRRIN
EFSKFSMENFDQSNNAKRKSIDSHSGRSKAAMSLMKKWMRATTEVKESFRVQCAKCPDPV
MSKYRHDVEFGVLSERIEDLIDGYLSRSSTIKKSILRDLLSIKVMKTICPPGEPVGLLAA
QSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMMASRNIKTPSMEIPFQNNLQNLE
KQAKRLRLRLKKCVLSDVLKNISINRRMEESPHRRLVHTITIKYLSHKYYKEEFSVHPRD
VIRCTEEIFFKNVFREIKKFAKVSKVLMHFEGEKKRVNDEDAAIDQIDPDEVPENTGNKT
RMDLGEMHESSDEEQAAEDADATMTKSLLRHRENQEYEDPEDEEEIDDIVNDKEEEADDD
NNANRIFKNEGEEDDDDNISKLSNRKSNKFTNRKDWVLHTYDYAMDYDYDESKLSWCKFT
FWLPLKTIRLDLPTIIKNAASKSVVWETPCIKKAFTFQNSKDETILKTDGLNIMEMFKYD
NILDLNRLYSNDIYNISQTYGIEAANRVIVREIRDVFKMYGITVDSRHLSLIADYMTFDG
TFKPLSRKGMENSASPLQQISFESSLGFLKTATLQGKKDDILSPSSRLMLGQPCKSGTGA
FSILPSLYNMEKQ
NT seq
5082 nt
NT seq
+upstream
nt +downstream
nt
atgatgagtaaataccataggccacgtttaacacccaaacatcaggattcccaacattta
ctgttttcagtcttcacggcgaatgatataaggaacttaagtgtaacgaaaatcagaaca
ccattatgttataacattcttggacatccattaaagggtggattatacgacccatcttta
ggtacaacgagaaacaattcagagatttgcagcacctgtggatacaacagttctaaatgt
ccaggtcactttggtcatgtagaattgccagtacccgttgtcaatccattatttcacaaa
gcattgtccatgctactgaaattgtcatgtttaagttgctttacgttacaagtaccgccg
tacatcaaattactgctatctgcaaaattaaagttactttatcaaggacacctcaatgat
ctcgacatcttggaccaagaagtaacatccataatatcgagtactcaaaaagaggaggaa
cgaacagagtgcattcgcaacgtaatcgataattacatgcagaactttttcaatagaatc
agatacagtcaaaccgaacttcaggattacgagaatcaagccaatgtaaagaacattatt
atgcaatggcacgtgtatgtcgaaagtatgctcaagcaatacgtgagaaacaacaaagct
gggatatgcgtaaactgtcacgatggtctaccgaagatttcgacgctacagaataagata
atgataagcaataagaaggtcgcatcccctagagcgacgcttgcgcacaaattggaaact
gtaatgatcatgccggatcaatctaaggaatatctacggcgattgtgggaaaacgaaaga
gattttctcaaaataattgtaccatgcttagaattggtagacatcgagtatcctactgat
gtgtttttctttgaagtaatacccgtgttaccaccgatcgtgcgtccagtaaattttctt
aatggtcaaatgatcgaacatccccagacctacatttacaaaagcatcatacaagattgt
ctagttttgagaaatatcatacaaacgatccaggatggaggtaccgatcatttgcctcag
gaaggtcgattagtctttgaacagataaaaggaatcacgccaatcgaaaagctgcacaat
gcttggcaggcattgcagcatgacgtgaatcacttaatggatcgtgacatgaacaaaact
cccgaatccatcaatggtcaaggcttaaagcaaattcttgaaaaaaaggagggtatcatt
aggatgcacatgatgggtaagagggtaaattttgccgcgcgctcggttattactcctgat
cctgatttgaatattgacgagattggcattcctgaagcttttgcttgcaaattgacgtac
cctacagctataacaccgtggaatgtcgttgaattgagacaattggtcttgaatggtccc
gatgttcatcctggcgcggttatggtagagaacgaagatggctcaatacaagctattagt
agtcgcgattctacacaaagagaagctatcgcgaagcgcctcttgacgacgagtgacaga
accaatgagtcctttgccggcgttaaagtggttcaccggcatcttcaaaatggtgatgta
ttgctgataaatagacaaccgacgttgcacaaaccgagtataatggctcacaaggcacgc
gttcttaagggagagaaaacattgcatcttcattatgcaaattgtaaagcatacaacgca
gactttgatggcgatgagctcaatgctcactttccgcaaaatgagctggccagaagtgaa
agttacaacatagctaatgtatccaatcagtatcttgtgccgaaagacggaactccattg
agcggccttatacaggattatatggtatctggagtgcgattgactaccagaggtagattc
ttttcgaagacgcactatacgcaattggtttatattgcgttaacacaagataatataatt
cttctgccgccggctatcgttaaaccgaaaatgctgtggtcgggtaaacaaatcctttcg
acagtcatgattaatatcattccttcgcataaggcgcgaattaatttgatctccagcacg
aagattagcgccaaggaatggcagacagagacgccgcgacattggaaatgcggaacggaa
tttaaaaatctgacaactatgtcggagactgaagttataattcgacacggggaattgttg
tgtggagtgctcgataaaatacactacggcgcaacaccctatggtcttattcattgtatt
tacgaattgtacgggggaatatgtgcgagcaaaatgctgagcgcatttggtaagctgttt
cggatgtttctgcaatgcgatggattcactctcggcgttgaggacattctgataactcgt
aagatcgacgaaaaacgcaaagagatcatttctaactgtagaaaagttggggaaactata
caaaggtctatggtaaaagtatccaatgacgcgcctatgaacgaaattcaagctaaaatg
gaggaatcttactggaataattcgaaatttcgcgcacaagttgatcacaagtataagagc
gctttagacgtttacaccaacgacattaacaaggtgtgtcttctaacgggtctcctcaaa
aagttccctaacaacaatttgcagctcatggtacaatctggcgcgaagggatccacggtt
aataccatgcagatatcgtgtctgctcggccaaagtgaattggaaggcaagaggcctcca
ttaatgatcagtgggaaaagtttgtcgagttttccggcgtacgatccaacacccagagct
ggcggcttcatcgacggtagattcatgactggcattagacctcaggagtgttttttccat
tgtatggcgggacgcgagggtctcattgacacagccgtgaagaccagtagatctggttat
ttacagaggtgtttagtcaagcatctggaaggtctgattgtcaattacgacgcgacagtc
agagactacgatggcagcctgattcagttttattacggagaggatggtctcgatataccg
ggctcacgttttctaaaaaaagaacaaatggaatttctagttgacaataaagatgctatt
atagacacaaaattattgcagtgcctaaaaactgataatgaagaaattatgaagacgatg
aaaaaaatcaagaaatgggaaagtaaaaatggttcctccttgcggaagaggagaatcaac
gagtttagtaaattttctatggagaattttgatcagagtaataatgcgaaacgaaaaagc
attgatagtcatagcggaagaagcaaagccgcgatgtcacttatgaagaagtggatgagg
gcaacgacagaagtaaaagaatcatttcgcgtgcagtgtgccaaatgtcccgatccagta
atgtcgaagtacaggcatgacgttgaatttggtgtattatctgaacggatagaagactta
atagacggatacctctcccgttcatcgacaattaagaaatccattttgagagatctacta
tctataaaagttatgaagacaatttgcccacctggtgagccggttggtctattagccgcc
caatccataggcgaaccgtccactcaaatgaccttgaataccttccacttcgcgggacgt
ggagagatgaacgtgacgttgggtattccgagattacgtgaaatcctgatgatggcatca
agaaacataaaaactccgagtatggaaataccctttcaaaataacttgcagaatcttgag
aagcaagcaaaaaggctaagattaagattgaaaaagtgcgtgttaagtgatgtgttgaaa
aacatctcgataaacaggagaatggaagagagcccgcacagaagattggtacacactata
acaatcaaatatctttctcacaaatattacaaggaagagttctccgttcatccgcgggat
gtgattagatgtaccgaggagatcttttttaaaaatgtgttcagggagattaagaagttt
gccaaagtgtcgaaagttttaatgcatttcgaaggggagaagaaacgggtgaacgatgaa
gacgcggcgatagatcagattgatcctgacgaggtgccggagaacaccggaaacaagacg
cgaatggatttgggagagatgcacgagtcatccgacgaggagcaggctgcagaagacgct
gatgcgacgatgacaaaatcattactgcgtcatcgagagaatcaagaatatgaggatccc
gaagatgaggaagaaattgatgatattgtgaatgataaagaggaagaggcggatgatgat
aataatgcaaatagaattttcaagaatgagggcgaggaagacgatgacgacaatattagc
aagttgagtaatagaaaaagtaacaaatttactaacaggaaagattgggtcttacataca
tatgactatgctatggattatgattatgacgagagtaaattgtcatggtgtaaatttacc
ttttggttaccactcaaaactatcagattagatttaccaacaataattaagaatgccgct
agcaaatctgttgtatgggaaacaccatgcatcaagaaagcttttacatttcaaaacagc
aaagatgaaacgattctcaaaacggatggtttaaatataatggaaatgttcaaatatgat
aatattcttgatttaaatagattatattctaatgacatttataatatttctcaaacatat
ggaattgaagccgcaaatagggtcattgtgagagaaatcagggacgtttttaaaatgtat
ggcatcaccgttgactctaggcatctgtccttgatcgcagattatatgacctttgatggc
acgttcaaaccactcagtcgaaaaggaatggagaattccgcttccccgttgcaacaaata
agttttgaaagctcactaggttttttgaaaacagcgacgttgcaagggaaaaaggatgat
atattgtcaccttcgagcagattgatgttaggacaaccgtgcaaatctggaactggagca
ttttctattttaccatcattatacaatatggaaaaacaataa
DBGET
integrated database retrieval system