Solenopsis invicta (red fire ant): 105205779
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Entry
105205779 CDS
T03916
Name
(RefSeq) zinc finger SWIM domain-containing protein 8 isoform X2
KO
K25207
zinc finger SWIM domain-containing protein 8
Organism
soc
Solenopsis invicta (red fire ant)
Brite
KEGG Orthology (KO) [BR:
soc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
soc04121
]
105205779
Ubiquitin system [BR:
soc04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul2 complex
Target recognizing subunit
105205779
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ZSWIM4-8_C
SWIM
Glyco_hyd_101C
Motif
Other DBs
NCBI-GeneID:
105205779
NCBI-ProteinID:
XP_011173585
LinkDB
All DBs
Position
5:17440743..17512599
Genome browser
AA seq
1666 aa
AA seq
DB search
MSKKSCEDGHQTVPTLCELSARCVASHIPFELVEHFYPPVPEQLQLRIAFWSFPDNEEDI
RLYSCLANGSADEFLRGEHLYRAKTVKEPLQIGFHLSASVNPQTNGVRAQFNVAVTFDRR
RITSCNCTCSSTAYWCAHVVAVCLHRIHMPTQVCLRAPVSESLSRLHREQLQKFAQYLIS
ELPQQILPTAQRLLDELLSTQPSAINSYCGAPDPTAGASAYDQTSWYLDEKTLHDNIKKI
LIKFCVPAPIVFSDVNYLSTTAPPAASEWASLLRPLRGREPEGMWNLLSIVREMFKRNDR
NAIPLLEIITEECMACEQILVWWFNTKVALLNGTGYGSKHNMNSNVHASQHACSSLCDEI
VVLWRLAALNPGLSPSEREMLHAQFMAWHLKIIDKVAKCRGSSMPHNSHNRSNSSQKDSL
KHDLAVFTGFKSALEACYLDWDEYVLPGITYTVENNPMYHCPFTCFRHAGDTRTEVNQVN
SSSAVLNYQPPMSHHHGRRPLNVGLVEFSYLDRRRLNPREFPLCSRSGGGDGNRSSVSSE
GFCENDTDIPDISESQVVLRQGCAQLNNCGDTDSQEGAGSESSSNSNVSMKNAQGSDKHR
SNASSETHSDSSDSSNNKPTSENAKCSRTNHAECRDKSRAVAPKGVSVKNEHESDQEKEA
GRPFKDESSSSSSDSPSGDEYNVYYYDPKAVTNNIGLPSKYAKSNMHTATTQDASIVLNN
LKKTEDPWDILFARAEGLYAHGHTREACIIGVQLAEELLANPPDLMIEGPPVPVKNKRKR
QHVNPASHQVTCLASATLAKCGFLCTVLAENPEYHNLAFRVGLFGLEMARPPANTKPLEV
KLAHQESELVVLLKRIPLGPTELAMIKQRAEQLKDGVMRSRGHALLPIMLASFIYDALDV
PRVKLPSEIDPNLGFDAAVAVLGLKANVSEADHPLLCEGTRRQRGDLAITLLVHYKDDPV
KLARIMDKLLDRDVHQLIKSPILSSYYTSNPPTKSEMARFVHDEERSSPLAGTDNNGENL
SLVGANSRPHSSTSAELEGGMSALTIQPQIVQPPVPIRTKEARYKSKRLYPSIPNQPSEA
SAHFMCELAKTVLSKAGGTSSTSLFTQPSTSQNHHGPHRALHMCAFQLGLYALGLHNCVS
PNWLSRTYSSHVSWITGQAMEIGAPAIWFLIDSWEGHLTPPEAVSIADKSSRGSDPNMVR
AAAELALSCLPHAHALNPNEIQRAISQCKEQSEAMLEKACITVENTAKGTSGVYPEVLFQ
VAKYWYELYLRQTPGGDQQDEIPYDPLQLDLNGVLLVDPGPSVDLSNTQMMPGPAQTVVV
TSTQPPPPQHYTHPTITTLAPLGVGMPYAMGPYSFVHPHHSIATFSGPMPSHRVTLPPAP
HMQMYHPFPHHPGHPQHPPHPHHPSPAAPPPPGPYYTPQPPPTPGTRHLYTMQQPIPVQA
GVAGPLPGQNSLPGPALVQTQSIISTVRAQPQVHRQNQTFNQQQLRTLVSAYRVGMLALE
TLARRVHDDRPQAKYARNPPYGEDVKFLLRVAKRLGTQYMHQICICAVNSIVSPFVLHHV
ALEAAQYLARNNPTLIVQHLRSALLAPLVHKCQQMYIQCMHQKLYHLTAGDYEEFASIVC
AARAAFQINPEGNTQFKEWLQSIKRSQSCNKDLWAQINAALQQTGK
NT seq
5001 nt
NT seq
+upstream
nt +downstream
nt
atgtccaagaagtcgtgcgaagatgggcaccaaacggtgccaactctttgcgagctttcg
gcacgatgcgtcgcgtctcatattcccttcgagctggtggaacacttctatcctcccgta
ccggagcagcttcagctgagaatagccttctggagttttcccgataacgaagaggacata
cggctttattcatgtctcgcaaacggtagcgctgacgaatttctacgcggcgaacatctc
taccgtgccaagaccgttaaggagcccctacaaatcggatttcatctgagtgccagcgta
aatccgcaaacgaacggggtcagagcacagttcaacgtcgctgtaacatttgatcggcgc
aggattacatcatgtaattgcacctgctcctcaacggcctattggtgtgcgcacgtggta
gctgtttgcctgcacagaatacacatgccaacgcaagtatgtctgagggcgccagtcagc
gagtccttgtcacgattgcatcgggaacaactgcagaaattcgctcaatatctcatcagt
gaattacctcagcagattttgcccactgcccagcggcttctggatgagctactctcgact
cagccaagcgctattaacagttattgcggagctccggatccgaccgccggagcatccgct
tacgatcagacttcctggtacttagacgagaagacgttacacgacaacatcaagaagatc
cttattaaattttgcgtgccggctcccatagttttcagtgatgttaattatttaagcacc
accgcacccccagccgcatccgaatgggcgtccttgctgcgaccgttgagaggtcgcgag
ccagagggcatgtggaatctcctttccatcgtacgcgagatgttcaagagaaatgaccgc
aatgccatacctttgctagagatcatcacggaagaatgtatggcctgtgaacagatcctt
gtttggtggttcaacaccaaagtcgcattactgaacggcaccggatatggcagcaaacat
aatatgaacagtaatgtacacgcttctcaacacgcgtgctcgtccttgtgcgacgagatc
gtggttctctggcgattggccgccttaaatcccggtctatcgccatcagagcgtgagatg
ttgcatgctcaatttatggcttggcacttgaagatcatagataaagtcgccaagtgtcgt
ggcagttccatgccgcacaactcacacaatagaagtaatagttcacagaaggattccctg
aaacatgatctcgcggtctttaccggatttaagtcggcgctcgaagcttgctaccttgat
tgggacgaatacgtcttgccgggaataacatataccgtcgaaaacaaccctatgtatcac
tgtcccttcacatgttttcgacatgctggagatacaaggacagaagttaatcaggtaaat
tccagttcagcggtattaaattatcagccaccaatgtcgcatcatcatggtcgacggccg
ttaaatgtaggtctcgtcgagttcagctacttggacagacgacgactgaatccgcgtgaa
ttcccattgtgttcgagaagtggaggcggcgatggaaatcgtagcagcgttagctctgaa
ggtttctgtgagaatgacaccgacattcccgatatatctgagtctcaggttgttctcaga
caaggttgtgctcaactaaataattgcggcgataccgattcgcaggaaggggctggtagt
gagtcatcttccaacagtaatgttagtatgaagaacgctcaaggctcggacaagcatcgc
tcaaacgcctcgtccgagacacatagtgatagtagtgatagtagtaataacaaacctaca
tccgagaacgcgaagtgcagtaggacgaatcatgcggagtgccgtgataaatcgcgcgcg
gttgcacccaaaggggtcagtgttaagaatgaacacgaatccgatcaagaaaaggaagct
ggaaggccattcaaagacgagagctcctcatctagtagtgacagtccttccggtgatgaa
tacaatgtctactattacgatcctaaagctgtaaccaataatattggtctaccgagtaaa
tatgctaaaagcaatatgcataccgctaccactcaggatgccagtatagttctaaataat
ttgaagaaaacggaagatccatgggacattttattcgcgcgagcagaaggactttatgct
cacggtcacacgagagaagcctgtattattggagtacagctagccgaggaactcttggcc
aatcctccagatctcatgatcgagggaccgccggtgccggtaaaaaacaaacgaaagagg
caacatgtaaatccggcctctcaccaggtaacatgtcttgcctcagcaactttagcaaaa
tgtggattcttgtgcacagtacttgccgaaaatccagaatatcacaatctggcatttcgc
gtaggtctttttggcttggagatggctagaccacccgctaatacaaaacctttagaagtc
aaactggctcatcaagaaagcgaattggtagttttgttgaaaagaattcctttaggaccg
actgaattagctatgataaaacaaagagccgagcaattgaaagatggagttatgagatca
agaggacacgcgcttttacccattatgttggctagtttcatttacgatgcgctcgatgta
ccaagagtgaaactaccttcggaaatcgatccaaatcttggatttgacgctgcggtggct
gttttgggattaaaggcgaatgtaagtgaagcagatcatcctcttctttgtgaagggact
cgcagacagagaggagatttggctattactttgctcgttcattacaaagatgatcccgta
aaattggccagaataatggacaagttgttggaccgagatgttcatcaacttattaaatca
cctattcttagtagttattatacttctaatcctcctacaaagagtgagatggcacggttt
gttcacgatgaagaacgttcgtctcctctagctggaactgataataatggtgaaaactta
tcacttgttggcgctaacagcagacctcacagcagtacgagcgcagaattagagggtggt
atgagtgcattaactatacaaccgcaaattgtacagccacctgtgcctattagaactaaa
gaagcacgatataagagtaaaaggctatatccgtctattcccaatcaaccgtcggaagca
agcgcgcacttcatgtgcgaattagcgaagactgtcttatcgaaggctggtggtaccagt
tcaacttcattattcactcaaccatccactagtcaaaatcatcatggtccccatagagcg
cttcatatgtgtgctttccaacttggcttatatgcccttggtctccataattgcgttagc
ccgaattggctcagtcgtacatattcaagccacgtgtcttggataaccggccaagcaatg
gaaatcggagctccagcaatttggttccttattgacagctgggaaggacacctgacgccg
ccggaagctgtcagtatagctgataagtcttcaagaggtagcgatccgaatatggttaga
gcagctgcggaacttgctttatcttgcctaccgcatgcacacgctcttaatcctaatgaa
attcagagagctatatctcagtgcaaggaacaaagtgaggccatgctagaaaaagcttgt
atcactgtggagaatactgcgaaagggacttctggtgtttatccagaggtactttttcag
gtggcaaagtattggtacgagttatatcttcggcaaactcccggtggagatcaacaggat
gagattccttatgatcctctacaattagatcttaatggggtattactagttgatccagga
ccatctgtggatttgtcaaatactcaaatgatgcccggaccggcacagacggttgtcgtt
accagtacacaaccaccaccgcctcagcactacactcatccaacaattacgactctggca
cctttaggcgttggcatgccgtacgccatgggcccttatagttttgtacatcctcatcat
tctatcgcgacgttcagtggtccgatgccttcgcacagagtcactctaccacctgcgcca
cacatgcaaatgtatcatccatttccacatcatcctggacatcctcaacatccaccgcat
ccacatcatccatctccggctgctccacctccacctggaccatattatacaccgcaacct
ccaccgacaccaggaacgcgtcatttatacacgatgcaacagcctataccagtccaagcg
ggagtggcgggtcctcttcctggacaaaacagtttacctggtcccgcattagttcaaacg
caatctataatatcaactgtgagagctcaacctcaggttcatagacaaaaccagacattt
aatcaacaacaattacggactcttgtttctgcataccgtgtaggtatgctagcattagaa
actttggctcgcagagtgcatgatgatcggcctcaagccaaatacgcgcggaatccgccc
tatggggaggatgttaaattcttgctcagagttgcgaaacggcttggtacccaatacatg
catcaaatttgcatctgtgctgtaaatagcattgtgagcccttttgtccttcaccatgtt
gctctggaagcagctcaatatcttgctagaaataatccaacgctcatcgtgcagcacttg
agatctgccttactggctccactagtacacaaatgccaacaaatgtatattcagtgcatg
catcaaaaattatatcatttaacagctggcgattacgaagaatttgctagtattgtttgt
gcagcaagggctgcttttcaaatcaatccggaaggaaatactcaattcaaagagtggtta
caatcgatcaaaagatctcaatcttgtaataaagatttatgggcgcagatcaacgcagcg
ctacaacagaccggcaaatga
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integrated database retrieval system
