Solenopsis invicta (red fire ant): 105205867
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Entry
105205867 CDS
T03916
Name
(RefSeq) probable DNA mismatch repair protein Msh6
KO
K08737
DNA mismatch repair protein MSH6
Organism
soc
Solenopsis invicta (red fire ant)
Pathway
soc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
soc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
105205867
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
soc03400
]
105205867
DNA repair and recombination proteins [BR:
soc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
105205867
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SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_IV
MutS_II
ARM_CUL7_CUL9
Motif
Other DBs
NCBI-GeneID:
105205867
NCBI-ProteinID:
XP_025987671
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Position
5:complement(17402511..17411155)
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AA seq
1129 aa
AA seq
DB search
MPKPSTPKVQNTILNYFTSPKSLKKSETQAKEHREKSQTPKRGQKNKGFRNGKENKNTDD
KKRSYKENSEEDEDEPIRPKKRRLIIPDVESGEDSEEEFKPGSESEESESSSEGETEHEP
STEEESPVQKKKTSHSKSKSGQASNSRNAKTNNKKDSKQSMSVQSQTVSNRPAAPQTWPH
LKLDFLKPEKIKDINRRTLNDPDYDPKTLYVPTDFLNNQTPAMRQWWELKSKHFDCVFFF
KIGKFYELYHMDAVIGVNELSLTYMRGEFAHSGFPEIGYGRYSASLIERGYKVARIEQTE
NPEMMATRCSKMSRPTKFDKVVKREICQVSTRGTRVYTPLDVEASTPNSNYLLSLVEKCD
VGSTASSYGVCFIDTTIGEFYLGQFVDDRCNSRLLTLLAHHPPVHIIYERNNLSQKTQQL
INSTLPAALKESLQRETQFWSATTVLKKLHEESYFKKEDGSSFAWPEGLKPYLNEGDSLG
LTPADNKELAVHALGGCVYLLKEFLLEQQLLAQACFNTYTPPDFSAASSRAGLNYANTMV
IDAVTIKNLRLFGEGSLISVLDRCCTAFGKRLLREWICRPSCRKTVIIERQQAVQELVDR
MDVTQSARAILSALPDLERLLSKIHAQGNAAKMKNHPEGRAIMFEGPTYSKRIIVDFTTT
LAKFEEVLKFIELFDDFKSNLITRYTRYEPDGEFPQLRETLDYFKTAFDHEDAKKQGCIV
PKKGVDAEYDSVLLELAEIKKDLDEYLEKQKQHFGVKVTFHGTDRKRYQIEIPESQVKKV
GPGYELQSQRKGFKRYYTAEAKELLARQMNAEEHKDKVLKDLNRRIFAQFSEKYDMWHTA
VYKLATMDVLISFADYVQIGDMCIPEIHDGSDGKIFIKIKDGKHPCIASDNFIPNDTSLA
TDSAASFMILTGPNMGGKSTLMRQVGLITIMAQIGSYVPASSCCMTLVDRIFTRLGANDD
ILAGQSTFLVELSETATILQHATPYSLVLLDELGRGTSTYDGTAIAASVVDALTKLNCRT
LFSTHYHSLVEDYKTNEEVTLAHMACMVETEEEEEVSQETVTFLYKLSEGACPKSYGFNA
ARLAGVPSIITKRAHEIASKMEQETNHKHIFSAFCKANGAEMRNLIAII
NT seq
3390 nt
NT seq
+upstream
nt +downstream
nt
atgccgaagccaagtacgccgaaagtacaaaatacaatactcaattattttacttctccg
aaaagtttaaaaaaatcggagacgcaggcgaaggagcatagagaaaagtcacagactccc
aaaagaggacaaaaaaacaaaggattcagaaatggaaaagaaaataaaaatactgatgat
aagaaaagatcatataaggagaacagtgaggaggatgaagatgagcctataaggcctaaa
aaacggcgtcttattattcccgatgttgagtctggtgaagattctgaagaagaattcaag
ccaggttctgagtctgaggaatctgaatcaagttctgaaggagagacggaacatgaacct
tcgacagaagaggaatcaccagtgcaaaagaaaaagacttcccattctaaatccaagtca
gggcaagcaagtaattctcgtaatgcaaaaacaaacaataaaaaagattcgaaacaatct
atgtctgtgcaaagtcaaacagtaagcaatcggcccgcagctccgcaaacttggcctcat
ttaaaattagatttcctaaaaccagagaagataaaagacataaacagacgaacgttgaat
gatccagattatgatcccaaaacgctctacgtacctactgactttttaaataatcagact
cctgcaatgaggcagtggtgggagttaaaaagtaaacactttgactgtgtatttttcttt
aaaatcggcaaattctatgaattgtatcacatggatgcagttatcggtgtcaatgagctc
agcctcacgtacatgcgaggtgaatttgctcattccggatttccggaaattggatatggt
cgttactcggcgagtctaatagagagaggatacaaagtcgcgcgaattgagcaaactgaa
aatccggaaatgatggcgacacgttgcagcaaaatgtccagaccgacaaaattcgataaa
gtcgtgaagcgggaaatttgtcaagtcagtactagaggcacaagagtgtatactccgtta
gacgtggaagcgtctacaccaaactctaattatctgttatccctggtcgaaaaatgcgat
gtcggttcaacggccagctcctacggagtttgctttatagacacgacgataggtgaattt
taccttggccaatttgtcgacgatcgttgcaactcgaggctattgactttgctggctcat
catccaccggttcatataatatacgaacgcaataatttgtcgcaaaaaactcagcagctt
ataaacagtactctaccagcggcgttgaaagaatcgttgcaacgcgagacacaattttgg
tctgctacaaccgtactaaagaaacttcacgaagaaagttatttcaaaaaagaggatggt
tcaagctttgcatggcctgagggtttgaaaccttatttaaatgaaggagacagtttgggt
ttaacgccggcagataataaagaattagcggtacacgcgctaggaggatgcgtttatttg
ctgaaggaatttctacttgaacagcaattattagcgcaagcttgtttcaatacttatact
cccccagacttttcagccgccagtagccgcgcaggtctcaattacgcaaacactatggta
atagacgctgttacaataaaaaatctgagactattcggagaaggttcgctcattagtgta
ttagaccgttgctgtactgcatttggcaaaagattgctgcgcgaatggatctgcagaccg
tcttgccgcaaaactgttattatagagcgccagcaagctgtgcaggaattagtggatcga
atggatgtgacacagtcggctcgcgcaattttgtcagctctgccggatcttgaaagactc
ttaagcaagatacacgctcagggaaatgcagctaaaatgaaaaatcatcccgaaggtaga
gccataatgtttgaaggcccgacctattcgaaaagaataattgtggatttcactacgaca
ctcgccaaattcgaagaagtgttgaaatttatcgaactgtttgatgatttcaaaagtaat
ctgataactcgctatactcggtatgaaccggacggtgagttcccacaattaagagagacg
ttagactatttcaagaccgcatttgatcacgaagatgctaagaagcaaggctgcatcgtt
ccgaagaaaggagtagacgctgaatatgattcagttctcctcgagctcgcagagatcaag
aaagatctagacgaatacttggaaaaacaaaaacagcatttcggcgtaaaagtaacattc
catggaacagatagaaaacgttatcaaatcgaaattcccgagtcgcaagttaagaaagtt
ggtcccggatacgaattacagtcacaaaggaaaggttttaaacgttattatactgccgag
gcaaaggaacttttggcaagacaaatgaatgccgaagagcataaggacaaagtcctgaaa
gatcttaataggcgaatattcgcacagttcagtgaaaagtatgatatgtggcatacagct
gtttacaaattggccactatggatgtgctcatctctttcgcggattacgtgcaaatcggc
gatatgtgtattccggaaattcacgacggatcggatggcaagatattcattaagataaaa
gatgggaaacatccctgcatcgcatctgataattttataccgaacgatacttcattggca
actgatagcgctgcctctttcatgattttgacgggaccgaacatgggaggtaaatcgacc
cttatgcgtcaagtaggtctgatcacaatcatggcgcaaataggcagctacgttccagcc
agttcgtgctgcatgacgctagtggaccgtattttcacgcgattgggcgcgaatgacgat
attctggccggtcaaagcacgttcttggtagaactaagtgaaactgctacgatactacaa
cacgctacgccttattcactagttcttctcgacgagttgggacgcggcacatcaacctat
gacggtacagctatagcagcttcggtcgtcgatgcattgaccaagctaaactgtcgtaca
ttattttcgacgcattaccattctttagttgaagattacaaaaccaatgaagaagtcaca
ttagctcacatggcatgcatggtggaaacggaggaggaagaagaagtgtcacaagagacc
gtgacatttttgtacaagctcagcgaaggggcatgcccgaaatcctacggattcaatgcc
gctcgattggcaggcgtaccatctataatcactaagagagcgcatgagatagccagcaag
atggagcaggaaactaatcacaagcacatatttagcgctttttgtaaggccaacggtgct
gaaatgagaaatctcattgctatcatttaa
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