Solenopsis invicta (red fire ant): 105207878
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Entry
105207878 CDS
T03916
Name
(RefSeq) TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
soc
Solenopsis invicta (red fire ant)
Pathway
soc03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
soc00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
105207878
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
soc03021
]
105207878
03036 Chromosome and associated proteins [BR:
soc03036
]
105207878
Transcription machinery [BR:
soc03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
105207878
Coactivators
SAGA/TFTC/STAGA complex
105207878
Chromosome and associated proteins [BR:
soc03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
105207878
STAGA complex
105207878
TFTC complex
105207878
SAGA complex
105207878
SLIK complex
105207878
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
EIF3I
TFIID_NTD2
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_EML
WDR55
WD40_MABP1-WDR62_1st
Beta-prop_IFT122_1st
Beta-prop_WDR75_1st
ANAPC4_WD40
WDR90_beta-prop_4th
Beta-prop_RIG_2nd
Beta-prop_TEP1_C
NBCH_WD40
Beta-prop_IFT140_1st
Beta-prop_SCAP
Beta-prop_WDR19_1st
Beta-prop_HPS5
Beta-prop_Vps41
WD40_like
Beta-prop_SPT8
Beta-prop_DCAF4
Beta-prop_Nup120_160
eIF2A
Beta-prop_EIPR1
RMC1_N
Cytochrom_D1
Mala_s_1-like
Beta-prop_DCAF12
Beta-prop_WDR35_TULP_N
B-prop_COPA_B_2nd
DUF5888
DUF7165
Motif
Other DBs
NCBI-GeneID:
105207878
NCBI-ProteinID:
XP_011175839
LinkDB
All DBs
Position
3:complement(27024601..27029902)
Genome browser
AA seq
589 aa
AA seq
DB search
MKMKRMKSEVISATIESYLKRRHYQANDVYRRSDQTTLFCQNSDQTTLNTTAECGTSQEN
SIVFSAITIDTIAADQAYQRLRKWMSNILNEKIRVELQGLLYPIFCHLYLEMIHTGNRQA
AAQFLKSHQDEFISDTERDFLEELGDVDTIQDIDMKTYVKVFRSRKYKVDLSESAHVCLR
QYLTKYGHIILMQIINTHITIIRKEDSPQIDGEVPEEKNQRYEASINGHVEQPSGTGVDR
EMRELQEAIRLIQNNAHQPLRLFTVKNAIENASCGLIAPKMDKLAVGFSTAEIRLWGIGE
TVLIKTKDKQTYIPSACDISPFCNEQESTVRSEAGAIILRGHTDVVHDLRFIPEVNILLS
VSSDKDMRAWRLNNYSCTAIYSGHNYPIWCMDTSVFNLYIGTGSHDRTAKLWSLDRTFPL
RIFAGHFLDVNCIKFHPNARYLATGSADKTIRLWSKDDGNLLRVYVGAQSTIYTLAFSPD
GKYLAAAGDDKSISIWDLASNNILTELKGHKDTVMNVDWSLDGQYIASASLDGIVRLWPT
QDFIKTLNGGSSSVMSQSEAPQIYQTYCSSILSLNYYKKNNSLICIGTK
NT seq
1770 nt
NT seq
+upstream
nt +downstream
nt
atgaagatgaaacggatgaaaagcgaagtaatcagtgcaacgatcgagtcttatttgaaa
cggcgtcactatcaggccaacgacgtataccgcaggagcgatcagacgacgttattctgt
cagaacagcgatcagacgacgttgaacacgaccgcggagtgcggtacctcacaagagaat
tcaatcgttttcagtgccatcaccattgataccatcgccgcagatcaggcttatcagcga
ttgaggaaatggatgagcaacatactcaacgaaaagataagggtggaattgcagggactt
ttatacccaatattttgtcatctttatttagagatgatacataccggtaatcgacaggct
gcagctcagtttctaaagtcacatcaggatgagtttattagtgacactgagcgagacttc
ttagaagaattaggtgatgtggatactatacaagacattgatatgaaaacttatgtaaag
gtgttcagatctagaaagtataaagtagatttatccgagtcagctcatgtttgcctgaga
caatatctaacaaagtatggacatataatattaatgcagattataaatacacacatcaca
ataatcagaaaggaagatagtccccaaattgatggagaagtacctgaagaaaaaaatcaa
agatatgaagcaagtattaatggtcatgtggaacagccatctggcactggtgtagatcgc
gaaatgcgagaattgcaggaagctatacgattgatacagaacaatgctcatcaaccatta
agattatttactgtgaaaaatgctatcgaaaatgcaagttgtggtcttattgctcctaaa
atggataaattagctgtaggttttagtacagccgaaatacgtttgtggggtataggagaa
acggtcttgatcaagacgaaagataagcaaacgtatattccgtctgcctgtgatatatca
ccattttgtaatgagcaagaaagcacagtaaggagcgaagcaggggcaataatattaaga
ggacatacggatgtggtacacgatttaagatttattccagaggtaaacattcttctttct
gtctcaagcgataaggatatgagagcgtggagactcaataattattcgtgtacagcaata
tatagtggtcataactatcctatatggtgcatggatactagtgtgttcaatttatatatc
ggcacaggctcacatgacagaacagcaaaattatggtcattggataggacatttccctta
agaatattcgctggtcattttttagatgttaattgcataaaatttcatccaaatgcgaga
tacttagcaactggttctgctgacaaaacgataagattatggtcgaaagacgatgggaat
ctactgcgagtatatgttggagcgcaatcaaccatttacactttagctttcagtccagac
ggcaaatatctagctgctgcaggtgatgataagtctatatctatatgggatttggcatcc
aataatatattgactgaactgaaaggtcataaagatacagtcatgaatgtagattggagt
ttagatgggcaatacattgccagtgcaagcctagacggaatcgtacgattgtggcctact
caagatttcatcaaaacgttgaatggaggatcgtcaagtgtaatgtctcaatcagaggcg
ccacaaatttaccagacatattgctcaagcattctctcattgaactattacaagaaaaat
aattcgttaatttgcatcggtactaaataa
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