Solenopsis invicta (red fire ant): 120358452
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Entry
120358452 CDS
T03916
Name
(RefSeq) pinin-like
KO
K13114
pinin
Organism
soc
Solenopsis invicta (red fire ant)
Pathway
soc03013
Nucleocytoplasmic transport
soc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
soc00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
120358452
03015 mRNA surveillance pathway
120358452
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
soc03019
]
120358452
03041 Spliceosome [BR:
soc03041
]
120358452
Messenger RNA biogenesis [BR:
soc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
120358452
Spliceosome [BR:
soc03041
]
Complex C
Other components
EJC/TREX
120358452
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pinin_SDK_memA
Pinin_SDK_N
Motif
Other DBs
NCBI-GeneID:
120358452
NCBI-ProteinID:
XP_039308705
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All DBs
Position
8:25777931..25779380
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AA seq
378 aa
AA seq
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MRKLNCQELCGVDRLEAQLEVARDGLRGLDRSIRKILGRELPDGESGPLQSRIPQKRLLQ
EDRRRAITDFVNNELPGGKRRWQGSNIEPKTVFSRLSARVPSTADDSADEDDSITKPAVS
SRVIATPREIPSRQEVIRRERTDERSRQRNKRMFGALLGTLQKFRQEETKLKAKEDKKAE
VEARVEEARRREKEELRRERQQLFLSRKQQLAQVRALEAKLARTQQFQEWRKAQLPLASF
IKTHTQPSLYYIPKRKHPQTDLLLAQSIKELNEKIERRENTLIEELDLIEVQIGLGKHSQ
NFEASSSLHTVEAPRLIEEGEENRDPNPEHNIEAAINDNADISMQSIINENFDNDNDHTV
EKKEDVQLDQVQPDVNNG
NT seq
1137 nt
NT seq
+upstream
nt +downstream
nt
atgaggaaattaaattgtcaagagttatgtggagtcgacagattagaagctcaactagaa
gtcgctcgcgacggtcttcgtggtcttgatcgtagcattcgtaaaattttgggtcgagaa
cttcctgacggcgaaagcggcccattgcaatctagaatacctcaaaaacgattgttgcaa
gaagatcgtcgaagagctataacagattttgtgaataatgagttacctggaggcaaacga
cgctggcaaggttctaatattgaaccaaaaacagtttttagtcgattaagtgcacgtgtt
ccatctactgcagatgacagtgctgatgaagatgacagcattactaagcctgctgtgtca
tccagagtaatagctactcctcgagaaattccttcgcgtcaagaggtaatcagacgagag
agaaccgatgaacgtagtcgacagagaaataaacgtatgtttggtgcacttttgggtact
ttacaaaaatttagacaagaggaaacaaaacttaaagcgaaggaagataaaaaagcagaa
gtagaagctagagtagaagaagctagaagacgagaaaaagaagaattgcgcagagaaaga
caacaattgtttttatcacgaaaacaacaattggctcaagtacgagcattggaagcaaaa
cttgcacgtactcagcagtttcaggagtggcgcaaagcacagttacctcttgcttcattt
ataaaaacgcatacacaaccttctctttattatataccaaagcgtaaacacccacagaca
gacttgttattagcgcaatccataaaagaactgaacgaaaaaattgaaagaagggaaaac
acattgattgaagaattagatctaatagaggttcagataggattaggcaaacattcacaa
aactttgaggcgtcttcatctttacatactgtagaagctccacgtttaatagaagagggc
gaagaaaatcgagatccaaatccagaacataatatcgaagctgcaatcaatgataatgct
gatatttcaatgcaatccataataaatgaaaattttgataatgataatgatcatactgta
gagaaaaaggaagacgtacagttggaccaagttcaaccagatgtaaacaatggctag
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