Sodalis praecaptivus: Sant_0500
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Entry
Sant_0500 CDS
T03004
Symbol
csrD
Name
(GenBank) Regulatory protein, CsrB/C sRNA degradationfactor
KO
K18765
RNase E specificity factor CsrD
Organism
sod
Sodalis praecaptivus
Brite
KEGG Orthology (KO) [BR:
sod00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sod03019
]
Sant_0500 (csrD)
Messenger RNA biogenesis [BR:
sod03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
Sant_0500 (csrD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EAL
GAPES4
GGDEF
DUF4381
Motif
Other DBs
NCBI-ProteinID:
AHF75597
UniProt:
W0HSW1
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All DBs
Position
542562..544508
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AA seq
648 aa
AA seq
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MRLNVRLSAMTAMLCALVTLLMLAGSALSYFRLHQQRLDRQLTAMADSFDRLMLTEPLPA
VAPWLPLAMDSAGITRLELLRRGETVYHLALPPGSGRGDPLSDTQRQRELPLPRHPDYRL
VIFYTDTLASDVHSLRATAPVSVALGLILVFLFLALRWLRRQIQPQESLETRARRIIYGE
RENVGEQPDEMPSLTGSAIDRLLRDLAQAREQRSRVDILIRAFAAHDARTGLTNRLSFDS
QLALQLEDNQDVGAHGVVLLIMRPDPERLAERLGPAHAAAIDGALINLVSVSVKRYPDAL
LAHYFRDDLAVLLPHCSLKEAESLTHQLLGALATLPDIPAACRDDLLHIGVSAYRPGQTA
VEVMESAEHAAREAGLQGGNGWSVYDNRVPQRARGNVKWRTLLENTLTGGGPQLLIRPAF
GRDGALDHYIVINRIQDGADTLTAAEFLPVMRQLGLAQRYERQQLLRLIPLLSQLPGVVL
SIAISVDSLLQRDFRHWLRDTLMQCGKSVRSQIMFELVEADLCQHLEPLRPALRLLTGLG
CLLTVNRAGMTLVSTGYISMVPISVIKLHPGLVRDIDRRQENQLFVQSLPEACIGTRTRV
FATGVRSAREWQTLLDHAVAGGEGDFFAPIAPLGELLKKYSRFDPRLV
NT seq
1947 nt
NT seq
+upstream
nt +downstream
nt
atgcgactcaacgtccgactctcggccatgacggccatgctttgtgccctagtgacgctg
ctgatgctggcgggcagcgcattgagttatttcaggctgcaccagcaacggctggacagg
cagttgacggcgatggccgacagcttcgatcgcttgatgttgacggagccgctgcctgcc
gtggcgccctggctgccgctggcgatggatagcgccggcattacccgactggagctgttg
cgtcggggggaaaccgtttaccacctggcgctgccgccgggcagcggacgcggcgaccca
ttgtccgacactcagcgacagcgggaattgccgctgccgcgccatcccgactaccggttg
gtcatcttctacaccgacacgctggccagcgatgttcactccctgcgggctaccgcgccg
gttagcgtggcgctgggtcttatcctcgtgtttttgtttctcgctctgcgctggctgcgc
cggcaaatacagccacaagaatcgctggaaacgcgggccaggcgcattatttacggcgag
cgcgagaatgtgggcgagcagccggatgaaatgcctagcctgaccggcagcgccatcgat
cgcctgttgcgtgatttggcgcaggcgcgtgagcagcgcagtcgggtggatattctgata
cgcgctttcgccgcccatgacgcgcgcaccgggctgaccaaccggctgtcgttcgatagc
cagctggctctgcaactggaggataaccaggatgtgggcgcccacggcgtggtgctgctg
attatgcgcccggaccccgagcggctggcggagcgtctggggccggcccatgccgcggcg
attgacggcgcgttaatcaatttggtgtcggtctcggtcaaacgttatccagacgcgttg
ctggcgcactattttcgcgacgatttagcggtactgttgccgcactgttcgctgaaagaa
gcggaatccctcacccaccagctgctgggcgctctggccaccctgccggatataccggcc
gcctgccgcgacgatctgctgcacattggggtaagcgcttaccgtcccggccagacggcg
gtggaagtgatggagagcgccgagcacgccgcgcgtgaggcggggctacaggggggtaac
ggctggtcggtctatgataatcgcgtgccgcagcgggcgcgcggcaacgtcaaatggcgc
acgctacttgagaacacgctgaccggcggcggccctcaactgctgatccgccccgctttc
ggccgcgatggcgcgcttgaccattacatcgtcatcaaccgcatccaggatggcgctgat
accttgaccgcggccgaatttttgccggtgatgcgccaattggggctggcgcagcgctat
gaacgccaacagctgctgcggttgatcccgctgctgtcccaactgccgggggtggtcctg
tcgatagcgataagtgtggactcactcttgcagcgcgattttcgtcactggttgcgcgat
accctcatgcagtgcggtaaatccgtgcgaagccaaattatgtttgaacttgttgaggcg
gatctctgtcaacatttggaacctctacgtccggcgctacgtctgttgaccggactcggt
tgtttgttaacggttaaccgggccgggatgaccctggtcagtaccggctacatcagtatg
gtaccgatttcagttatcaaactgcatcccggcctggtgcgcgatatcgaccgtcgacag
gagaatcaactgttcgtgcaaagtttgccggaagcctgcatcggcacccggacgcgggtt
tttgcgaccggcgtgcgcagcgcgcgcgagtggcaaaccttgttggatcatgccgtagcg
ggcggcgaaggcgatttcttcgcaccgattgcgccgttaggggagttgctaaaaaaatat
tcacgatttgatccgagattagtataa
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