Sodalis praecaptivus: Sant_1487
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Entry
Sant_1487 CDS
T03004
Symbol
sbcB
Name
(GenBank) Exonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
sod
Sodalis praecaptivus
Pathway
sod03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sod00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
Sant_1487 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sod03400
]
Sant_1487 (sbcB)
Enzymes [BR:
sod01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
Sant_1487 (sbcB)
DNA repair and recombination proteins [BR:
sod03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
Sant_1487 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
Sant_1487 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Sant_1487 (sbcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_X-T_C
RNase_T
Motif
Other DBs
NCBI-ProteinID:
AHF76545
UniProt:
W0HWH4
LinkDB
All DBs
Position
complement(1704057..1705478)
Genome browser
AA seq
473 aa
AA seq
DB search
MANPLAQPTFLVHDYETFGKHPALDRPAQFAGIRADSQFETLGEPEVFFCRPADDYLPEP
EAVLITGITPQQALRDGVTEAEFARRIHQLFSVPATCILGYNNVRFDDEVSRNLFYRNFY
DPYGWSWQQGNSRWDLLDVVRACYALRPDGIEWPLNDQGLPSFRLEHLTRANGIEHANAH
DAMADVYATLAMAKLLRQAQPKLFEYLYRHRGKHQLKTLVDIATMKPLVHVSGMFGAARG
NTAWIAPLAWHPDNPNALIVCDLSGDLQVFEDLDSDALRTRLYTRRDALGEDAAVPLKLV
HLNKCPVLAPANTLRPLDAERLGIQRQRCLDNLTWLRRRPEVREKVVALFAESAPFPPSD
DVDAQLYDGFFSDADRAAMNIIQATAPENLPALDISFVDSRLKPLLFRYRARNFPHTLDH
DEQLRWLEHRKTRFTEPRLAAYVQQLETLYQAHEGDERKARLLRALFDYLQTL
NT seq
1422 nt
NT seq
+upstream
nt +downstream
nt
atggctaatccgttagcacagcccacatttctggtccacgattatgaaacgttcggtaaa
caccccgccctagaccgtccggcgcagttcgcaggtattcgcgccgatagccagttcgag
accttaggcgagccggaagtgtttttttgccgcccggccgacgattatctaccggagccg
gaggcggtgctcattaccgggatcacgcctcagcaggcgttgcgtgacggtgtcaccgaa
gcggaatttgcccgtcgtatccaccaattatttagcgtgcccgctacctgcatactgggt
tataacaatgtgcgcttcgacgatgaagtcagccgcaacctgttttaccgcaacttttac
gatccttacggctggagctggcagcaggggaattcccgctgggacctactggatgtcgtg
cgcgcctgctacgccctgcgtcccgacggcattgaatggccgttgaatgaccagggtctg
cccagctttcgcctggagcatttgacccgcgccaacgggattgaacatgccaatgcccat
gacgccatggccgatgtctacgcgaccctggcgatggccaaattgctgcgccaggcgcag
ccgaagctgtttgaatatctttaccgccaccgcggcaagcatcagttaaagacgctggtg
gacattgccacaatgaaaccgctggtccatgtgtctggtatgttcggcgccgcccggggc
aataccgcctggattgcgcccctggcctggcatcccgataaccccaacgccctcatcgtc
tgcgatctcagcggcgatttgcaggtgtttgaggatctggacagcgatgcgttgcgcacc
cggctgtacacgcggcgcgacgcgctgggggaagatgccgcggtaccgctcaaactggta
catctcaataaatgcccggtgctggcgcccgccaacaccctgcggccgctggatgctgaa
cggcttggcatccagcgccagcgctgtctcgataaccttacctggctgcggcgccgtccg
gaagtcagggaaaaagtggtggcgctgtttgccgaaagcgcgccctttcctccttcggac
gacgtggatgcgcagttgtatgacggtttttttagcgatgccgatcgcgccgcgatgaat
attatccaagccaccgccccggaaaacctgccggcgttggatatcagctttgtcgactcg
cgtcttaagccgctgctgtttcgctaccgcgcgcgcaatttcccccacaccttggatcac
gatgagcagttacgctggctggagcaccgcaagacccgctttaccgagccgcggctggcg
gcctatgtacagcaattggagacgctgtatcaggcccatgaaggggatgagcgaaaagcg
cggctgctgcgcgcgctgtttgactatttgcaaacgttgtaa
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