Sodalis praecaptivus: Sant_3302
Help
Entry
Sant_3302 CDS
T03004
Symbol
hrpB
Name
(GenBank) ATP-dependent RNA helicase
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
sod
Sodalis praecaptivus
Brite
KEGG Orthology (KO) [BR:
sod00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sod03019
]
Sant_3302 (hrpB)
Enzymes [BR:
sod01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Sant_3302 (hrpB)
Messenger RNA biogenesis [BR:
sod03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
Sant_3302 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
CON_HrpB
HA2_N
AAA_22
wHTH-PRTase_assc
Cas3-like_C_2
ResIII
Motif
Other DBs
NCBI-ProteinID:
AHF78294
UniProt:
W0HWZ2
LinkDB
All DBs
Position
complement(3775714..3778149)
Genome browser
AA seq
811 aa
AA seq
DB search
MALLPVSAVVDELLAALQSAAQVMLHAPTGAGKSTWLPLEILRSGGLPGRVVMLEPRRLA
AKNVALRLAEQLGERPGQTVGYRMRNESRCGPATRLEVVTEGILTRQLQQDPALDGVSLV
ILDEFHERSLQADLALALLLDVQRGLRDDLKVLIMSATLDDRRLSQLLPQAPVIRSAGRS
FPVERRYQALPAQTRTEEAMAGAVQQLLRQQAGSLLLFLPGVAEINRVQGLLGERLAEEV
MLCPLYGALPLEAQQRAIRPAPEGRRKVVLATNIAETSLTIEGIRLVVDSGLERVAEFDP
RSGLDRLTTRRISQASMAQRAGRAGRLSPGVCLHLFSQDQGERAPEHHAPEITYADLTPF
WLELLQWGVNESAQLSWLDAPPAPALAAAVNTLTALGALDARQRLTPAGRAMAGYGCDPR
LGAMLYHAGEDADAEATAALLAAMIEEPPRSGSPDIRDHFYRPLPHWTARARQLRARCGG
GDGRPDVDLAPLLLAWGFRDRIARRRDADGRYRLASGAGAALAPDDALSAQEWLIAPGLL
QLSQSPDARIRLALPLDIARLAAARPAWFSRTTAMQWDEDKGSLRVVQRERLGQLVLREQ
PQARPSDAVMAQAMLDWISEQGLGVLTWEREAVQLRQRLLCAGEWLPEAGWPAVDDHALL
AALPRWLLPSLSGVRDARGLARVNLAEALLRLLDWPLRQRLDSQLPSHYTVPTGSRLPLR
YQQGEPPVLAVRMQEMFGEQQTPRVAEGRVAVVLELLSPAHRPLQITRDLAAFWCGAYRE
VQKEMKGRYPKHPWPDDPARALPTRRTRKTS
NT seq
2436 nt
NT seq
+upstream
nt +downstream
nt
gtggcgttattaccggtcagtgccgtggttgatgaattgctcgccgccctgcaaagcgcc
gcgcaggtgatgctgcacgcgccgaccggcgccggcaaatcgacctggctgccgctggaa
attctgcgcagcggtggcctgccgggcagggtggtgatgctggagccgcggcgcctggcg
gccaagaacgtggcgctgcggctggcggaacagttgggcgagcgtccgggccagacggtc
ggctaccggatgcgcaacgagagccgctgcggtccggcaacccggctggaggtggttacc
gagggcattttgacgcggcaattgcagcaggatccggcgctcgacggcgtctcgttggtg
atcctggatgaatttcacgagcgcagcctgcaggcggatctggcgctggcgctgctgctg
gacgtgcagcgcggcctgcgagacgatctgaaggtgcttattatgtccgcgaccctggac
gatcgccggctcagccagctgttgccgcaggcgccggtgatccgctccgccggacgtagc
tttccggtggagcgccgctatcaggcgctgccggctcagacgcgaacggaagaggcgatg
gccggcgcggtgcagcaactgctgcggcagcaggccggttcgctgctgctgtttttgccc
ggcgtggcggaaatcaaccgggtgcaggggctgcttggcgagcggctggcggaggaggtg
atgctgtgccccctttacggcgccttgcccctggaggcccagcagcgcgccatccgcccg
gcgcctgaaggacgccgcaaggtggtgctggccaccaatatcgccgagaccagcttaacc
atagagggtattcgcctggtggtggacagcggcctggagcgggtggcggagttcgacccg
cgcagcgggctggaccgtctcactacccggcgcatcagccaggcgtccatggcgcagcgc
gcgggccgggccggacggctgtcgccgggcgtgtgcctgcatctgttcagtcaggatcag
ggcgagcgcgcgccggagcatcatgcgccggaaattacctacgccgatttgacccccttc
tggctggagctgttgcagtggggcgtcaacgaaagcgcgcagctttcctggctggatgcg
ccgccggcgccggcgctggcggccgcggtgaacactctgacggcgctgggggcgcttgat
gcccggcagcgcctaacccccgccggccgcgccatggccggctacggctgcgatccgcgc
ctgggggcgatgctgtaccacgccggcgaggatgccgacgccgaagctaccgccgcgctg
ctggcagccatgatcgaagagccgcccaggagcggctcgccggatatccgcgatcacttt
tatcgaccgttgccgcactggacggcgcgcgcgcgtcagttgcgcgcccggtgcgggggc
ggcgacggccggccggatgttgatttggcgcctctgctgctggcctggggctttcgcgat
cgtatcgcccgccgccgcgacgccgacgggcgctatcggcttgccagcggcgcgggggcg
gcgctggcgccggatgacgcgctgagcgcgcaggagtggctgatagcccccggtctgctg
caactgagccagagcccggacgcccgtatccgtctggcgctgccgctggatatcgcccgt
ctggccgccgcacggcccgcctggttcagccgcactaccgctatgcagtgggatgaggac
aaaggcagcctgcgggtggtgcagcgcgaacggttagggcaactggtgctgcgggagcaa
ccgcaggccaggccgtcggatgcggtgatggcgcaggcaatgcttgactggataagcgaa
cagggactgggggtgctgacctgggagcgcgaggccgtccagctgcgccaacgcctgctg
tgcgccggcgaatggctgccggaggccggctggccggcggtggacgatcacgcgctgctg
gcggcgctgccccggtggctgctgccgtctttgagcggcgtacgcgacgcgcgcggcctt
gcgcgcgtcaatctggccgaggcgctgctgcgtttgctggactggccgttgcgacaacgg
ctggatagtcagctgcccagccactacactgtgcccaccggcagccgtctgccgctgcgt
tatcagcagggcgagccgccggtgctggcggtccgcatgcaggagatgttcggcgaacag
cagacgccgcgggtggcggaaggacgcgtggcggtggtgctggagctgctgtcgcccgcc
catcggccgctgcaaatcacccgtgatttagcggcgttttggtgcggcgcctatcgcgag
gtgcaaaaagagatgaaagggcgttatccgaaacacccctggccggacgatccggcgcgg
gcgctgcctacccggcgtacccgtaaaacgtcataa
DBGET
integrated database retrieval system
