Sodalis praecaptivus: Sant_3447
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Entry
Sant_3447 CDS
T03004
Symbol
deaD
Name
(GenBank) Inducible ATP-independent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
sod
Sodalis praecaptivus
Pathway
sod03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sod00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Sant_3447 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sod03019
]
Sant_3447 (deaD)
03009 Ribosome biogenesis [BR:
sod03009
]
Sant_3447 (deaD)
Enzymes [BR:
sod01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Sant_3447 (deaD)
Messenger RNA biogenesis [BR:
sod03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Sant_3447 (deaD)
Ribosome biogenesis [BR:
sod03009
]
Prokaryotic type
rRNA helicases
Sant_3447 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
DeaD_C
CMS1
Cas3-like_C_2
ThylakoidFormat
Motif
Other DBs
NCBI-ProteinID:
AHF78436
UniProt:
W0HX84
LinkDB
All DBs
Position
complement(3949791..3951674)
Genome browser
AA seq
627 aa
AA seq
DB search
MRHVYMSEVETSFADLGLKAPILNALNDLGYEKPSPIQAACIPHLLAGRDVLGMAQTGSG
KTAAFSLPLLHNINPELAAPQVLVLAPTRELAVQVGEACADFAKHMKGVNVVALYGGQRY
DVQLRALRQGPQVVVGTPGRLLDHLKRGTLDLSNLSGLVLDEADEMLRMGFIEDVENILA
QVPAQHQTALFSATMPEAIRRITRRFMNEPQEVRIQSSVTTRPDISQSYWTVHGMRKNEA
LVRFLEAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLDRLKDGR
LDILIATDVAARGLDVDRISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERR
LLRNIERIMKLTIPEVELPTAEVLSTRRLAKFAAKVQNQLESSDLDMYRALLAKLQPAEE
LDMETLAAALLKMAQGERPLILPPDPVIERRPRREFRERDERRDGGERPPRRERRDVGEM
DLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEMLSHFT
RTRILNKPMNMQFVGEAQSRGGERRGGPGAGRGNYSGERRDGGRRSFGDRRDGAAGGERR
FNRDGQRAPRRDGDAAPAGRRRFGGDA
NT seq
1884 nt
NT seq
+upstream
nt +downstream
nt
atgaggcacgtgtacatgtctgaagtagaaacctcttttgccgatctggggctgaaagct
cctatccttaacgcactgaacgatctcggttatgaaaagccgtcacccatccaggccgcc
tgtattccgcatctgctggccggccgtgatgtactgggcatggcgcagaccggtagcggt
aaaaccgcggccttctctttgccgctgctgcacaatatcaatcccgaactggccgcgccg
caggtgctagtgctggcgccgacccgcgaattggcggtacaggtcggggaagcctgcgcc
gatttcgccaaacatatgaaaggcgtcaacgtggtcgccctgtacggcggacagcgttat
gacgtgcaattacgcgcgctgcgccaagggccgcaggttgtggtcggcaccccgggccgc
ctgctggatcatctgaagcgcggtacgctggatctgtccaatctgagcgggctggtactg
gacgaagccgatgagatgttgcgcatgggctttatcgaagacgtggaaaatattctggcg
caggtgcccgcgcagcatcagaccgcgctgttctccgccaccatgccggaagcgattcgc
cgcattacccgccgtttcatgaacgagccgcaggaagtgcgtattcagtccagcgtgacc
acccgtcccgatatcagccagagctactggacggttcacggtatgcgcaagaatgaagcg
ctggtgcggttcctggaggcggaagatttcgacgccgccattatcttcgtgcgcaccaaa
aacgccacgctggaagtggccgaagcgctggagcgcagcggttacaacagcgctgccctg
aacggcgacatgaaccaggcgctgcgcgagcagacgctggatcgcttaaaggatggccgc
ctggatattctgatcgccaccgacgtcgccgcccgcggcctggacgttgatcgcatcagc
ctggttgtgaactacgatattccgatggattcagaatcctacgtgcaccgtatcggccgt
accggtcgtgccggccgcgccggtcgggcgctgctgttcgtggaaaaccgcgagcgccgt
ctgttgcgcaatatcgagcgcatcatgaaactgaccatccccgaagtggagctgccgacc
gccgaggtgttgagcacccgccgcctggccaagtttgccgccaaggtgcaaaaccagctg
gaaagcagcgatctggatatgtaccgcgccctgctggccaaactgcagccggcggaagag
ctggatatggaaacgctggccgcggcgctgttgaaaatggcccaaggcgaacgcccgctg
attctgccgccggatccggtgattgaacgccgtccgcgccgtgaattccgcgagcgcgac
gagcgccgcgatggcggcgagcgtccgccgcgccgcgaacgccgcgatgtgggcgaaatg
gatctctaccgtatcgaggtgggccgcgatgatggcgtggaagtccgccatatcgtcggg
gcgatcgccaacgaaggggatatcagcagccgctatatcggcaacattaaattgttcgcc
tcccattcgaccattgagctgccgaaaggcatgccgggagaaatgctgtctcacttcacc
cgcacgcgtattctgaacaagccgatgaatatgcagtttgtcggtgaagcgcagtcgcgc
ggcggcgaacgccgtggcggtccgggcgcaggccgtggtaactacagcggtgaacgccgt
gacggcggccgtcgcagcttcggcgatcgccgcgatggcgctgccggcggtgaacgtcgg
ttcaaccgtgacggtcagcgtgcgccgcgccgcgacggtgacgccgcaccggccggccgg
cgccgtttcggtggcgatgcataa
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