Sodalis praecaptivus: Sant_3498
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Entry
Sant_3498 CDS
T03004
Symbol
rnr
Name
(GenBank) Ribonuclease R (RNase R)
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
sod
Sodalis praecaptivus
Pathway
sod03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sod00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Sant_3498 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sod03019
]
Sant_3498 (rnr)
03016 Transfer RNA biogenesis [BR:
sod03016
]
Sant_3498 (rnr)
Enzymes [BR:
sod01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Sant_3498 (rnr)
Messenger RNA biogenesis [BR:
sod03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Sant_3498 (rnr)
Transfer RNA biogenesis [BR:
sod03016
]
Prokaryotic type
tRNA degradation factors
Sant_3498 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
HTH_12
Rho_RNA_bind
OB_Dis3
HTH_20
Motif
Other DBs
NCBI-ProteinID:
AHF78485
UniProt:
W0I1Z5
LinkDB
All DBs
Position
complement(4004071..4006674)
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AA seq
867 aa
AA seq
DB search
MSQDPFLEREAEKYAFPVPSREFILAHLAKREKPASREELAQELDISGEDQLEGLRRRLR
AMERDGQLIFTRRQCYALPERLDLLRGTVIGHRDGFGFLRVEGSKDDYYLSAEQMKMAIH
GDVVMAQPQGADRKGRREARIVRVLVPKTSQIVGRFFIDAGSAFVVPDDSRLSFDILIPP
EATQGARMGFVVVVELTQRPTRRTKAIGKVVEVLGDNMGTGMAVDIALRTHDIPYVWPPE
VEQQLADLKEEVPEAAKRGRIDLRALPLVTIDGEDARDFDDAVYCEKKRSGGWRLWVAIA
DVSYYVRPHTPLDQEASRRATSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTIS
AQGRLSSYKFYEAVMNSHARLTYNKVWQILQGQQELRSHYAPLIKPLTQLHEMFQTLEQA
RLQRGGISFETEEAKFIFNAERRIERIEPVKRNDAHKLIEECMILANIAAARFVEKHKEP
ALYRVHDRPSNDHITSLRTVLGELGLTLGGGDKPEPKDYADMMNLVAGRPDHEMLQTMLL
RSMKQAIYDPENRGHFGLALQAYAHFTSPIRRYPDLALHRAIKYLLGRQNGDVDGRATPT
GGWHSELEEMLQLGQQCSLSERRADEATRDVADWLKCDFMQDHVGQVFSGIITSVTSFGF
FVRLDELFIDGLVHVSSLDNDYYRYDNIGQRLIGESGGRVYRLGDAVEIRVEAVHMDERK
IDFSLISSRRQPRGAGKTERQRQQQAARGANDGKPPRRRSSSKQPANFEPDSAFRPTGKG
GDKPGGGRGKRQRGGAQTTQGAQATQPAAHGAGRGKGGHASSAPAKPSTEDTSRKKTSAE
GATRNKAAGGKTRRRRKPAAASGRSEN
NT seq
2604 nt
NT seq
+upstream
nt +downstream
nt
atgtcacaagatccctttctggaaagagaggcagaaaaatacgcgttcccggtgccaagc
cgagaatttatcctcgcccatttagccaagcgggaaaaacccgccagccgcgaggagttg
gcgcaagaactggatatcagtggtgaagaccaactggaaggcttgcgccgccgcctgcgc
gcaatggagcgtgacgggcaactgattttcacccgtcggcagtgctatgcgctaccggag
cgtctggatttgttgcgcggtacggtcatcggccatcgagacggtttcggtttcctgcgc
gtcgaaggcagcaaggacgattattatttgtccgccgaacagatgaaaatggccattcat
ggcgatgtcgtcatggcgcagccgcagggcgcggaccgcaaaggccgccgcgaggcgcgc
attgtgcgggtgctggtgccgaaaaccagccagatcgtgggccgctttttcattgacgcc
ggcagcgcgttcgtggtgccagacgatagccgtctcagtttcgatatcttaatcccgccg
gaagcgacccagggcgcccgcatggggttcgtggtcgtggtggagctgacccagcgcccg
acgcggcgcaccaaagccatcggcaaagtggtggaggtgctcggcgataatatgggaacc
ggcatggcggtggatattgcgctgcgcacccacgatattccctatgtctggccgccggaa
gtcgagcagcagttggcggatttaaaagaagaggtgccggaagcggccaagcgcgggcgt
atcgatttacgcgcgctgcccttggtgactatcgacggcgaggatgcgcgcgacttcgat
gacgcggtgtactgtgagaaaaaacgcagcggaggctggcgtctgtgggtggcgattgcc
gatgtgagctactatgtccggccgcatacgccgctggaccaggaagcgagccggcgtgcg
acttcggtctatttcccctcgcaggtgattccgatgctgcccgaggtgctgtccaacggg
ctgtgctccctcaatccgcaggtggacaggctgtgtatggtctgtgagatgaccatttcc
gcccaggggcgtctctcttcctacaaattttacgaagcggtgatgaattctcacgcgcgc
ctgacttacaacaaggtctggcagatcttgcagggccagcaggaattgcgcagccattac
gcgccgctcatcaagccgctgacccagctgcatgaaatgtttcagacgctggaacaggcc
aggttgcagcgcggtggcatctcttttgagaccgaagaggccaagttcatcttcaacgcg
gagcgccgcatcgagcgtattgagccggtgaagcgcaatgatgcccataagcttatcgaa
gagtgcatgatcctggcgaatattgccgcggcgcgctttgtcgagaagcataaagagccg
gcgctttatcgcgtgcatgaccggccaagcaatgaccatatcacctcgttgcgcacggta
ttgggcgaactggggctgaccttggggggcggcgataaacctgagcccaaagattatgcc
gatatgatgaatttggtcgctggccgtccggaccacgaaatgctgcaaaccatgctgctg
cgatcgatgaagcaggcgatttatgatcctgaaaaccgcggccacttcgggctggcgctg
caggcgtatgctcacttcacctcgcctatacgccgttatccggatcttgcgctgcatcgg
gcgatcaaatatcttctcggccgacagaatggcgacgtcgatggacgggccacaccgacc
ggcggttggcattccgaactggaagagatgttgcagctcggtcagcaatgttcgctcagc
gagcgtcgcgccgatgaagcgacccgcgacgtggcggattggctgaagtgcgattttatg
caggatcacgttgggcaagtattcagcggcattattaccagcgtcaccagtttcggtttc
tttgtgcgtctcgatgagctgtttatcgacggcttggtgcatgtctcatcgctggataat
gattattatcgctatgacaacatcggccagcggctgataggcgagtccggcggcagggtg
taccggctcggggacgcggtagaaatccgcgttgaagccgtgcatatggacgaacgcaaa
atcgatttttcattgatttccagccgccgtcagccgcgcggtgccggcaaaaccgagcgc
cagcgtcagcagcaggccgcccgcggcgctaatgacggcaaaccgccgcgccgccgcagc
agcagtaaacagcccgccaattttgaacccgacagcgcattccggccgacagggaagggg
ggcgataaacccggcggcgggcggggtaagcgccagcgcggcggtgcgcaaacgacccag
ggcgctcaggcgactcagcctgcggcgcacggcgcagggcgcggcaaaggcggtcacgcc
tcttcggcgccggccaaaccgtcgaccgaggacacttcgcgcaagaaaacctccgccgag
ggcgctacccgtaataaagccgctggcggcaaaacgcgccgccgcaggaaacccgccgcg
gcttccggtcgctcagaaaactga
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