Spinacia oleracea (spinach): 110774912
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Entry
110774912 CDS
T05137
Name
(RefSeq) polyadenylation and cleavage factor homolog 4 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
soe
Spinacia oleracea (spinach)
Pathway
soe03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
soe00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
110774912
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
soe03021
]
110774912
03019 Messenger RNA biogenesis [BR:
soe03019
]
110774912
Transcription machinery [BR:
soe03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
110774912
Messenger RNA biogenesis [BR:
soe03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
110774912
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_PCFS4
CID
Pcf11_C
Motif
Other DBs
NCBI-GeneID:
110774912
NCBI-ProteinID:
XP_021835205
UniProt:
A0A9R0HRA2
LinkDB
All DBs
Position
5:40122777..40131701
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AA seq
1035 aa
AA seq
DB search
MEMESSRRPPFDRSNLISKKPRLTEDSTLGGRQFQQPPLQRSAIGLGSGSTRFRANERDR
ESDDSVRGSLQQFQQHQELVNQYKTALAELTFNSKPIITNLTIIAGENLQAAKAIAATIC
ANIIEVPAEQKLPSLYLLDSIVKNIGRDYIKYFATKLPEVFCKAYRHVDPSVHSGMRHLF
GTWKGVFPPQALQIIEKELGFLTAVNGASSGTTTSKSERQPQSIHVNPKYLEARHRFQQS
SKMKGTDIGLSDVGSSEDAERPERTTGAGTERPWMDPTIKMHNMRPQREPLRESGLPKQG
GAVYGDYENASGISRPLSTSGGKPSEKLNGQRWLGAGREGEESISGEKNGFDIKRIPKYT
AVRPASSSIPSVQKQPRFAAEISESWKNSEEEEFMWDDMGTKAMDPGATPVLKKEIWSED
LEKVEMSRHLPKWKSQTEVRSNFEREHSADSLSSEQKDQLPLGHPRSSHWKMQELHQADS
SSPLLQQMGPHSVIGPSSVAVSSFGVPTTAVSASAGSIGRLSLGHSVISQRPPSPLLSKR
DPRQSLVEKDHMRSYSLVRTDPRAASLSGQLNARVRDKTSQDSVPSRLQNLSVQKLEAQA
LQKTPSPTPFQQRPVPPAEKLSNSKTELSDIVQKAQQLLGSSMMKKGASPDTLNPIAGDM
QGQSNVSSLLAAVMKSGLLSGSSASEHIGLRPPPTTPLASQSTLVSSKDATASSGPRDST
GTIPRSKVEKTPLVSPISPSAIMSSTLAQTSNVAAAKSNPLSILSTLISKGLISAPQTEA
AAAVSVKSEAQLQAQSPITATVTAGTAPPVSKVSAAIPESSTENISAFELDEKKPDTVQS
MKEVKDPIGYEFRPRVLRDLHPAVIDRLSENLPHRCIACGLRFKLQERLARHSEWHAFKN
SIPNCLNKPSRRWYSKPADWVAGKAGFPFGYHSTCLIEGFSRMREENEKMVPADESQCVC
LLCGELFEDFYSQERDEWMFKGAVYLSTTSGSTEEGGSCSESDSQKLIVHANCMSGDTTR
DLGSIRGIKVQEKGT
NT seq
3108 nt
NT seq
+upstream
nt +downstream
nt
atggagatggagagttctcgtagaccaccgtttgatagatcgaatttgatttcgaaaaag
ccgcgattaacagaagattcaaccctcggcggccggcaattccaacaaccgccgctgcaa
agatcggcaattggtctgggttcgggttcgactcggtttagagcgaatgagagggataga
gaatctgacgattcagttcgcggctctttacagcagtttcagcagcatcaggagctggtt
aatcagtacaagaccgcattagctgagttaaccttcaattcgaagcctattattacgaat
ttgacaattatcgccggggagaatttgcaggctgccaaggccattgcggccaccatttgt
gctaacattattgaggttcctgctgaacagaagcttccctcactttatctactggatagt
attgtgaagaatattggtcgagattacataaagtattttgcaacaaaattacctgaggta
ttttgcaaggcatacaggcacgtggatccttcagtacattctggtatgcgacatcttttt
gggacatggaaaggagtttttcctcctcaggcgctgcagattattgagaaagaactagga
ttcctgacagctgtcaatggcgcgtcgtctggaactaccacatcaaagtctgagcgtcaa
ccacagagtattcatgtgaatccgaagtatttggaagctagacatcgttttcagcagtct
agtaagatgaaaggaacagatattggtctctcggatgttggatcttctgaagatgcagag
agaccagagagaactactggtgcaggaactgaaaggccgtggatggatcctacaataaaa
atgcataatatgcgtcctcaacgagaaccactgagagaatccggtcttccaaagcaggga
ggtgcagtatatggagattatgaaaatgcatctgggatttcaagacctttgagcacatca
ggtggtaaacctagtgagaagcttaatggacagagatggcttggtgctggcagagagggg
gaggaatcaatatctggcgaaaagaatggatttgatattaagcggattccaaagtataca
gctgtcagaccagcaagtagtagtattccctcggtacagaaacagccaagatttgctgct
gagatatctgagagctggaaaaactctgaagaagaggagttcatgtgggatgatatgggc
acaaaggcaatggatcctggtgctacgcccgtcctaaaaaaagaaatttggtctgaggat
cttgagaaagtggaaatgagtaggcaccttcctaaatggaaaagtcagactgaagtgagg
tccaactttgagagagaacattctgcagacagtctttcctctgaacagaaagatcaactg
cctcttggacacccaaggtcttcccactggaagatgcaggaacttcaccaggctgatagt
tcaagtcctttgttacagcaaatgggccctcactccgtgattggtccatcttcagttgca
gtctctagttttggtgtgccgactactgctgtttcagcatccgcaggatctatagggcgt
ctatctcttggacattctgtgataagccagcgtcccccttctcctttattgtctaaaagg
gatcctcgtcaaagtcttgttgagaaagatcatatgagatcttattccttggttcggact
gatcctagagcagcatcattgtcagggcagttaaatgccagggttcgtgataaaacttct
caggactctgttcctagtcgacttcagaatctaagtgtgcaaaagttggaagcacaggct
ctgcagaaaacaccttctcctacaccttttcaacaaaggcctgttccacctgctgagaag
ctgtccaactcaaagactgagctttctgatattgtccagaaagctcagcagctgcttggt
tcttccatgatgaagaaaggtgcctcgccagatactttgaatcccattgctggtgatatg
caagggcagtctaatgtgagtagtttattggctgctgtgatgaaaagtgggttactttct
ggtagctctgcttctgaacatattgggcttcgacctcctcctactactcctctcgcttct
caatcaactttagttagttccaaggatgctacagcatcatcaggtcctcgtgattcaaca
ggtactatccctcgaagtaaagtagaaaagactcctctggtgtcaccaatctctccatct
gctataatgagcagtacattggcacaaacatcgaatgtggcagctgctaagtcaaacccg
ctttcaattttgagcacactgatatcaaaggggttgatatctgcaccacaaactgaagca
gctgctgccgtttctgtgaaatctgaggcccagcttcaagcgcaaagccctattactgcc
actgtaactgcaggtacagctccaccagtttcgaaagtttctgcagctatacctgaatca
tctactgaaaatatttctgcatttgaacttgacgaaaagaaacctgacacagttcaaagc
atgaaagaagttaaggatcccataggatatgaattcaggccacgtgtgctccgggatttg
catcctgctgtaatcgacagactctctgaaaatctaccacacaggtgcatcgcatgtggt
cttcgatttaaactgcaagaaagacttgccagacattcagagtggcacgcctttaaaaat
tcaataccaaactgcttgaataagccatcaaggagatggtattcaaagcccgctgactgg
gttgccgggaaggctggatttccgtttggttatcattccacctgtctcatagaggggttc
agcaggatgagagaagagaatgagaaaatggttcctgcagatgaaagtcaatgtgtatgt
cttttatgtggcgaactgtttgaagatttctacagtcaagagagggatgaatggatgttt
aaaggagcagtttacttgtctaccacatctggaagcactgaggaaggaggatcttgcagt
gagagcgattcgcaaaaattgattgtacatgccaactgtatgtcaggtgatacaactcgt
gatttgggatctatcaggggaattaaagtgcaggaaaaggggacgtag
DBGET
integrated database retrieval system
