Spinacia oleracea (spinach): 110775308
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Entry
110775308 CDS
T05137
Name
(RefSeq) protein ANTHESIS POMOTING FACTOR 1
KO
K14962
COMPASS component SWD2
Organism
soe
Spinacia oleracea (spinach)
Pathway
soe03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
soe00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
110775308
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
soe03019
]
110775308
03036 Chromosome and associated proteins [BR:
soe03036
]
110775308
Messenger RNA biogenesis [BR:
soe03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
110775308
Chromosome and associated proteins [BR:
soe03036
]
Eukaryotic type
Histone modification proteins
HMT complexes
COMPASS/SET1 complex
110775308
COMPASS/SET1 complex (yeast)
110775308
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40_CDC20-Fz
WD40
Beta-prop_EML_2
WD40_WDHD1_1st
WDR55
EIF3I
ANAPC4_WD40
Beta-prop_CAF1B_HIR1
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_WDR75_1st
Beta-prop_IFT122_1st
Beta-prop_EML
Beta-prop_SPT8
WD40_MABP1-WDR62_1st
Beta-prop_TEP1_C
WD40_RFWD3
WDR90_beta-prop_4th
Beta-prop_NUP159_NUP214
PQQ_3
Beta-prop_NWD2_C
WD_LRWD1
Ge1_WD40
PQQ
RMC1_N
Motif
Other DBs
NCBI-GeneID:
110775308
NCBI-ProteinID:
XP_021835607
UniProt:
A0A9R0HRI9
LinkDB
All DBs
Position
4:81182734..81201697
Genome browser
AA seq
341 aa
AA seq
DB search
MAITSLTELDDDVVRSMAIGAVFSDFGGQINSIDFHRTSDLLVTASADDSVRLYDIVNAK
LLKTTYHKKHGADRICFTHHPSAVVCSSKYNLDSTGESLRYLSMYDNRCLRYFKGHKERI
VSLCMSPINDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPAVAYDQQGLVFAVAMEGGA
VKLFDSRSYDKGPFDTFLVGGDNAEVCDIKFSNDGKSMLLTTTNNNVYVLDAYAGEKRCG
FSLEPSQNTTIEATFTPDGQYVVAGSGDGSMHAWNINMRSEVARWSSHIGVPSCLKWAPR
RVMLVAASSVLTFWIPNHGKITGESNANDADVATKLEVLPH
NT seq
1026 nt
NT seq
+upstream
nt +downstream
nt
atggcgatcacgtcactcacagagcttgatgacgatgtagtgcgtagcatggccattggc
gccgtgttctcagactttggtggacagataaattcaattgatttccaccgaacaagtgat
ctcttggttacagccagtgctgatgattcggtacgactctatgacattgttaatgccaaa
cttctgaagaccacatatcataagaaacatggtgctgatcgtatatgcttcacccaccac
cctagtgcggttgtttgctcttcaaagtataacctcgattcaacaggagaatccttacga
tatctttccatgtatgataatcgctgtcttcgttatttcaaaggccataaagaaagaatt
gtttccttgtgcatgtcaccaatcaatgatagctttatgtctggttcccttgaccacagt
gtaagaatatgggatctccgagtaaatgcctgccaggggattttacgtttgcggggaaga
ccagcagtcgcatatgaccagcaaggccttgtttttgctgttgctatggaagggggtgct
gttaaattgtttgattcacgctcctatgacaagggtccttttgatacctttttagttggt
ggagataatgcagaagtctgtgacataaaattcagtaatgatggaaagtctatgctcttg
actaccaccaacaataacgtttatgttcttgatgcgtatgctggagaaaagcgttgtgga
tttagcttagagccttcacaaaacacaactatagaagcaacattcactcctgatggacag
tatgttgttgcaggttcaggtgacggaagcatgcacgcttggaacattaacatgcggagt
gaggttgcacgttggagtagtcatatcggtgttccatcgtgtttgaagtgggcaccacga
cgtgtgatgctagtggcagcttccagtgttcttactttctggatacctaaccatggaaag
atcactggtgaatccaatgccaatgatgctgacgtagcaacgaaactggaagtgcttccc
cactga
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integrated database retrieval system
