KEGG   Spinacia oleracea (spinach): 110775856
Entry
110775856         CDS       T05137                                 
Name
(RefSeq) THO complex subunit 3
  KO
K12880  THO complex subunit 3
Organism
soe  Spinacia oleracea (spinach)
Pathway
soe03013  Nucleocytoplasmic transport
soe03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:soe00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    110775856
  09122 Translation
   03013 Nucleocytoplasmic transport
    110775856
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:soe03019]
    110775856
   03041 Spliceosome [BR:soe03041]
    110775856
Messenger RNA biogenesis [BR:soe03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     110775856
Spliceosome [BR:soe03041]
 Complex C
  Other components
   EJC/TREX
    110775856
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    110775856
SSDB
Motif
Pfam: Beta-prop_THOC3 WD40_Prp19 Beta-prop_WDR5 Beta-prop_IFT122_1st WD40_CDC20-Fz WD40 WD40_WDHD1_1st Beta-prop_WDR3_1st Beta-prop_EML_2 EIF3I ANAPC4_WD40 Beta-prop_CAF1B_HIR1 WD40_Gbeta WDR55 Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR3_2nd Beta-prop_TEP1_2nd Beta-prop_WDR19_1st Beta-prop_NOL10_N Beta-prop_Aladin Beta-prop_WDR36-Utp21_1st Beta-prop_RIG_2nd Beta-prop_Vps41 DSE1_N Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_C WD40_MABP1-WDR62_2nd NBCH_WD40 Beta-prop_WDR75_1st Beta-prop_EIPR1 Beta-prop_WDR35_TULP_N eIF2A WD40_RFWD3 Beta-prop_DCAF12 Beta-prop_HPS5 Beta-prop_EML Beta-prop_IFT140_1st Tricorn_2nd WD40_MABP1-WDR62_1st TRM82_WD PAC11 WDR90_beta-prop_4th Beta-prop_NUP159_NUP214 CFAP251_N Beta-prop_WDR41 Beta-prop_Nup120_160 WD_LRWD1 PROPPIN DUF7099 Beta-prop_WDR11_1st Beta-prop_NWD2_C PD40
Other DBs
NCBI-GeneID: 110775856
NCBI-ProteinID: XP_021836142
UniProt: A0A9R0HSE3
LinkDB
Position
2:complement(3924918..3933498)
AA seq 319 aa
MAEQKTEEATHPFKNLCSREYQGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHSHG
KAKDTEFKGHTDSVDQLCWDPKHADLLATASGDKTVRLWDVRSGKCTQQAELSGENINIT
YKPDGAHIAVGNRDDELTILDVRKFKPIHRRKFNYEVNEIAWDMTGEKFFLTTGNGTVEV
LAYPSLKALDTLTAHTAGCYCIAIDPLGRYFAVGSADSLVSLWDIKEMLCVRTFVKLEWP
VRTISFNHTGEYIASASEDLFIDISSIETGRSTHQIPCRAAMNSVEWNPKSNLLAYAGDD
KNKYQTDEGVFRIFGFQNA
NT seq 960 nt   +upstreamnt  +downstreamnt
atggcggagcagaaaactgaggaagcaacacacccatttaagaatctatgcagcagagaa
taccagggtcacaaaaagaaggtgcattcagtggcttggaattgtacggggacgaagctc
gcttcaggatcggttgatcaaacggctcgagtttggcacattgaacctcatagtcatggc
aaggcaaaagatactgaatttaaggggcacactgatagtgtggaccagctctgttgggat
cccaaacacgcagatctacttgcaacagcatcaggggataaaacagttcgtttgtgggat
gttcgtagtgggaagtgcacacagcaagcagaacttagtggtgaaaatatcaacattaca
tataaacctgatggggcacacattgctgttggaaacagggatgatgaactaacaattctg
gatgttagaaaatttaagccgattcacaggcgcaagttcaattatgaggtaaatgagatt
gcatgggacatgactggagagaagttctttctgacaactggaaatggtactgtcgaagtc
cttgcatacccctcgttgaaggcacttgacacccttaccgctcacactgctggttgttat
tgcattgcaattgatccactaggaagatattttgctgttggaagcgccgactcgttggtc
agtctttgggacattaaagagatgctatgtgtacgaacgtttgtgaaactcgaatggcct
gtccgaacaataagtttcaatcacactggagagtatattgcttcagccagtgaagattta
tttattgatatatcaagtattgaaactggacgatccacccaccaaataccttgtcgggca
gcaatgaatagtgttgaatggaatcccaagtccaacttgcttgcatatgctggagatgac
aaaaacaaataccaaacagatgaaggtgttttccgcatatttggtttccagaatgcttag

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