Spinacia oleracea (spinach): 110776548
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Entry
110776548 CDS
T05137
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2 isoform X1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
soe
Spinacia oleracea (spinach)
Pathway
soe03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
soe00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110776548
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
soe03041
]
110776548
03009 Ribosome biogenesis [BR:
soe03009
]
110776548
Enzymes [BR:
soe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
110776548
Spliceosome [BR:
soe03041
]
Complex A
U2 snRNP components
U2 related factors
110776548
Complex B
110776548
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
110776548
Ribosome biogenesis [BR:
soe03009
]
Eukaryotic type
90S particles
Helicases
110776548
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
DEAD
Helicase_C
AAA_22
AAA_19
SRP54
ResIII
ABC_tran
T2SSE
nSTAND3
AAA_33
AAA_30
Flavi_DEAD
Fructosamin_kin
AAA_7
NACHT
FtsK_SpoIIIE
TsaE
UvrD-helicase
Motif
Other DBs
NCBI-GeneID:
110776548
NCBI-ProteinID:
XP_021836809
UniProt:
A0A9R0HVU8
LinkDB
All DBs
Position
5:complement(704925..710519)
Genome browser
AA seq
727 aa
AA seq
DB search
MGTERKRKVSLFDVVDDSAVKLLKSNGGGIPMMMNNGIANINRWNGRAYSQRYFDILEKR
RSLPVWQQKEEFLKVLHTSQTIVLVGETGSGKTTQIPQFVLEAVELESPDKRKKMMVACT
QPRRVAAMSVSRRVAEEMDVTLGEEVGYSIRFEDCSNSRTVLKYLTDGMLLREAMTDPLL
ERYKVIILDEAHERTLATDVLFGLLKEVLRNRPDLKLVVMSATLEAEKFQDYFNGAPLMK
VPGRLHPVEIFYTQDPERDYLEAAIRTVVQIHLCEPPGDILVFLTGEEEIEDACRKINKE
VGNLGDQVGPVKVVPLYSTLPPAMQQKIFESAPPPSKEGGPLGRKIVVSTNIAETSLTID
GIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRAGRAGRTQPGKCFRLYTEKSFN
NDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDD
EGNLTRLGEIMSEFPLDPQMGKMLVVSSEFNCSNEILSISAMLSVPNCFVRPREAQKAAD
EAKARFGHIDGDHLTLLNVYHAYKQNQEDPNWCYENFINQRTLKAADNVRQQLVRIMARF
NLKLCSTDFNSRDYYINIRKAMLAGYFMQVAHLEKTGHYLTVKDNQVVHLHPSNCLDHKP
EWVIYNEYVLTSRNFIRTVTDVRGEWLVDIANHYYDLDNFPNCEAKRVLEKLYKNRDKDR
EESKNRK
NT seq
2184 nt
NT seq
+upstream
nt +downstream
nt
atggggacagagagaaagaggaaggtgagcttgtttgacgtagtagacgacagcgcagtc
aagctactcaaatccaacggcggtggtattccgatgatgatgaacaacggaattgctaat
atcaatcgctggaatggacgggcatattctcagcgatattttgatattttggagaagcgg
aggtctcttcctgtttggcagcagaaggaggagttcttgaaggttcttcatactagccag
accatcgtcttggtcggtgaaactggtagtggtaaaactacccagattcctcaatttgtc
ttggaagctgtggaattggagtcgcctgataaacggaagaagatgatggttgcctgtacc
cagccacgtagggtggcggcaatgtctgtctcacgtagagttgcagaggaaatggatgta
actctgggagaagaagttggttacagcattcgttttgaggactgtagtaattctagaacg
gttttgaagtatctaacagatggtatgctgttgagagaagcaatgacagatccgctcctg
gagaggtataaagttataattcttgatgaggctcacgaaagaacattggcaacagatgtg
ctatttgggcttttgaaagaagtgttgagaaacagaccagacttgaagttggttgttatg
agtgctactctagaggctgagaaatttcaggattactttaatggcgcacctcttatgaaa
gttcctggaaggctgcatcctgttgaaattttctacacccaagatcctgaaagagactac
cttgaagcagctatccgaactgttgtacaaatacacttgtgcgaaccccctggtgatata
cttgttttcctcacaggagaggaggagattgaagatgcctgccgtaaaattaataaagaa
gtgggaaatctaggtgaccaagttggccctgtgaaagttgttccgttgtattctactctt
cctcctgctatgcagcagaaaatatttgaatctgctccacctccatcaaaagaggggggt
cctcttgggaggaaaattgtggtgtctactaacattgctgaaacatctttgaccattgat
ggtatagtttatgtgattgatccgggatttgctaaacagaaagtctataatcctcgagta
cgtgtcgaatcattgttggtttctcctatttcaaaggcaagcgcacaccagagggctggt
cgtgctggaagaacacagcctggtaaatgctttaggttatacacagagaagagtttcaat
aatgatcttcagccacagacttatccagaaatactgcggtcaaatctggcaaatactgta
ctcacgctgaagaaactgggtattgatgatctggtacatttcgactttatggacccacca
gctccagagactctgatgcgagcattagaggttctgaactatcttggtgctttggacgat
gagggtaatttgacaaggcttggagagattatgagtgaatttccactggatcctcagatg
ggaaagatgcttgttgtgagttccgagttcaactgttcaaatgaaatcctttcaatatca
gcaatgctttcagtacccaattgctttgtgaggcctagggaggcccagaaagctgcagat
gaagcaaaagctaggtttggacacatcgatggagatcacctgacgctgctgaacgtttat
catgcctacaagcagaatcaagaggacccgaactggtgttacgagaattttatcaatcaa
aggacgctgaaagctgcagataatgtgaggcagcaacttgtgcgcattatggcaaggttc
aaccttaagctatgcagcactgatttcaacagcagggattactatatcaacatacggaag
gcgatgctggcaggatatttcatgcaagtggcacatctggaaaagacaggacactatttg
acagtgaaagataaccaagtggttcacttgcatccttcaaattgcctggatcataaacca
gagtgggttatatacaacgaatacgtgttgactagtcggaatttcatccgtaccgtgact
gatgttcgtggagaatggcttgttgatattgcaaatcactactacgaccttgataatttc
ccgaattgtgaagcaaagcgggttctagagaagctctacaagaaccgtgataaggatagg
gaagaaagtaagaacaggaagtag
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