Spinacia oleracea (spinach): 110776874
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Entry
110776874 CDS
T05137
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 24 isoform X1
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
soe
Spinacia oleracea (spinach)
Pathway
soe03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
soe00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110776874
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
soe03041
]
110776874
Enzymes [BR:
soe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
110776874
Spliceosome [BR:
soe03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
110776874
Complex B
110776874
Complex C
U2 SnRNP specific factors
110776874
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
SNF2-rel_dom
CMS1
Motif
Other DBs
NCBI-GeneID:
110776874
NCBI-ProteinID:
XP_021837131
UniProt:
A0A9R0JJK2
LinkDB
All DBs
Position
5:complement(1000665..1005996)
Genome browser
AA seq
772 aa
AA seq
DB search
MSKRKFGFEGFGINRQQTYNFERSQQQPQRLYTPPSSSRPHDHREDTDVDDIEFDDKINN
ISDAGNPAEEDEIDPLDAFMEGIHKEVSEAPPPKPKEKLDKYRDDDDEEDDPMESFLRAK
KDVGLTLASDALRAGYDSDEEVYAAAKAVDAGMIEYDSDDNAVVLDKRKIEPITALDHSE
IDYEAFTKDFYEEKPSISGMTEQDVTEYRNSSKIRVSGFDVPRPVKTFDDCGFPPPLMSA
ITKQGYEKPTNIQCQALPIVLSGSDIIGIAKTGSGKTAAFVLPMIVHIMDQPELGKGEGP
IGVICAPTRELAHQIYLETRKFAKPYGLRVCAVYGGMSKLDQFKELKAGAEIVVATPGRL
IDLLKMKALTMKRATYMVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEK
LAREILSDPVRVSVGEVGMANEDITQIVQVLPSDADKLPWLLEKLQGMIDEGDVLVFASK
KASVDELESQLAQKGFKVASLHGDKDQASRMEILQKFKSGTYHVLIATDVAARGLDIKSI
KSVVNFDIAKDMDMHVHRIGRTGRAGDKDGVAYTLITQKEARFAGEMVNSLIAAGQNVSV
ELMDLAMKDGRFRSKRDARKGGGGKKGKGRGGGGGGAGGRGVRGVDFGLGIGYNTESNGA
PSQTPSRTAAVNSLRTGVMAQFKSSFVAATPNPQNQATSNSNVYVNRRPAMSGFVSGGTI
GGDTNRPQPIPTTNYTPASGGGSIGGQNSDQKSNESARERTRERRRPSGWDR
NT seq
2319 nt
NT seq
+upstream
nt +downstream
nt
atgtctaagcgcaaattcggctttgaaggcttcggaatcaatcgacaacaaacatacaac
ttcgaacgatctcagcaacaacctcaacgtctctacactcctccgtcttcttcgcggccg
cacgaccaccgtgaagacactgacgttgacgacatcgaattcgacgataaaatcaataac
atttccgacgcgggaaatcctgctgaagaagatgaaatcgatcctttggacgctttcatg
gagggaatacacaaggaagtgagtgaagcgccgccgccgaagccgaaagagaagcttgat
aagtatagagacgatgatgatgaagaggatgatccgatggagagtttcttgagggcaaag
aaagatgtagggttaactctggcgtcggatgcgctccgagctggttacgattccgatgag
gaggtttacgctgctgctaaagcggttgatgctgggatgattgagtatgattcagatgat
aatgctgtggtgcttgataagaggaagattgagcctattactgctttggatcatagtgag
atcgattacgaggcatttactaaggatttctatgaggagaagccttcaatttctggcatg
actgagcaggacgtcacagagtatcggaatagctcaaaaatccgcgtatctggttttgat
gttccaaggccggttaaaacttttgacgactgtggtttccctcctccactgatgagtgca
atcacaaagcaaggttacgagaagcctaccaacatacagtgccaagctttaccaattgtg
ctgtcagggagtgatataattggtatagcaaagactggatccggaaaaactgctgctttt
gtgcttccgatgattgtgcatataatggaccagcctgagcttggtaaaggagaaggacca
attggagtaatatgtgcacctaccagagaattagctcatcagatatatttggaaactagg
aaattcgcgaaaccttacgggttacgtgtgtgtgctgtctatggtgggatgtccaagctt
gatcagtttaaagaactcaaggcaggagcggagattgttgtcgctactcctggaagattg
attgatttgctgaaaatgaaagcattaacaatgaagagagcaacgtatatggtgcttgat
gaggcagatcgcatgtttgaccttggttttgagccgcagataaggtctattgttggtcag
atcaggccagaccgtcagactttactcttttcagccacgatgcccagaaaagttgagaag
ttggcacgagaaatactttctgatcccgtgcgtgtttcagtaggggaggtaggtatggca
aatgaagatataactcagattgttcaagtgcttccatcagatgcagataaattaccttgg
ctcctagaaaagctgcaaggaatgattgatgaaggtgatgttttggtgtttgcttcgaaa
aaggcatccgtagacgaacttgagtctcagcttgcacagaaagggttcaaagttgcttct
cttcacggtgataaagatcaggcttctcggatggagatactgcagaagtttaaatctggg
acataccatgttctaattgctacggatgtcgctgctcggggtcttgatatcaagtcaatc
aagtctgtcgttaactttgacattgcaaaagatatggatatgcatgtgcatcgtattggt
agaactggccgtgctggtgataaagacggagtcgcatacactcttatcacacaaaaagag
gctaggtttgctggggaaatggttaatagtttgatcgctgctggtcagaatgtgtccgtg
gaactgatggatcttgccatgaaggatggaagattcaggtctaaacgtgatgcaaggaaa
ggaggtggtggaaagaagggaaaagggagaggaggcggaggaggaggtgctggtggtcga
ggtgtccgtggtgtggattttggtttgggtattgggtataatacagaatccaacggtgct
ccctctcaaacacccagtcggactgccgctgttaattcacttaggacaggtgtgatggcg
cagttcaagagcagctttgtggctgcaacacctaaccctcagaatcaggctactagcaat
tcaaacgtgtatgtcaacaggcgcccagctatgagtggtttcgtttcgggtggtactatt
ggtggtgataccaacagacctcagccaattcctacaacaaattacactcctgcatcagga
ggagggagcattggtggtcagaattctgatcagaagagcaatgaaagtgcgagagaaaga
acaagagaaaggcgaaggccctcaggctgggataggtag
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