Spinacia oleracea (spinach): 110777269
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Entry
110777269 CDS
T05137
Name
(RefSeq) E3 ubiquitin-protein ligase COP1-like
KO
K10143
E3 ubiquitin-protein ligase RFWD2 [EC:
2.3.2.27
]
Organism
soe
Spinacia oleracea (spinach)
Pathway
soe04120
Ubiquitin mediated proteolysis
soe04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
soe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
110777269
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
110777269
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
soe04121
]
110777269
Enzymes [BR:
soe01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
110777269
Ubiquitin system [BR:
soe04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
110777269
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
110777269
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_CDC20-Fz
WD40
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WDR55
Beta-prop_RIG_2nd
Beta-prop_DCAF4
EIF3I
Beta-prop_WDR19_1st
zf-C3HC4_2
Beta-prop_EIPR1
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_C
Beta-prop_HPS5
Beta-prop_CAF1B_HIR1
zf-C3HC4
Beta-prop_EML
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_1st
WD40_RFWD3
zf-C3HC4_3
zf-RING_2
ANAPC4_WD40
WD40_like
Beta-prop_WDR75_1st
zf-C3HC4_4
zf-RING_UBOX
Beta-prop_DCAF12
Beta-prop_SCAP
U-box
Beta-prop_WDR35_TULP_N
zf-RING_5
DUF4349
DUF1664
zf-Nse
Motif
Other DBs
NCBI-GeneID:
110777269
NCBI-ProteinID:
XP_021837564
UniProt:
A0A9R0JK46
LinkDB
All DBs
Position
6:complement(1060414..1069556)
Genome browser
AA seq
658 aa
AA seq
DB search
MPEISIGEGALVPYMKSDSPPNETPDGGGESVSGDKDFLCPICMQIIKDAFLTACGHSYC
YMCIFTHLRNKNDCPCCSRFLTPKLIFPNFALNKILKKMSNYQFGKSASLSEQLRRTLQQ
GCDVSVKDLDCLLSLLGEKKRKMEQEEAETNLQVLLEFLVCLRKGKLEELSQIQNDLQYI
KEDIDAVQKHKTELWNVNKSRTVRLRMRGDDFDTKGSGHTILRPMVDGSGTQVTISGSLP
CGEVNVGAPVSQECLENDVRAGSKLQQQAPTEKYKARKRQVEAQFTDLQECYLQKRRHRA
KQKQAAEGRNLNNMNNLGYHAGLEDFWSVLTSCTRYSQLKAISELRLGNVFHSANIISSI
EFDRDHELFATAGVSKRIKVFEFSSVVEEPAEVHCAVVDIATRSKLSCLSWNKYTKHYIA
SSDYEGIVTVWDVATNQSVGEYEEHEKRAWSVDFSRTEPSLLVSGGDDCKVKVWCTKQEK
SALNIDLNANICSVKCNPGSSMHVAVGSADHNVHYYDLRNISQPVHVFSGHRKAVSYVHF
LSANELASASTDSTLRLWDVKENKPLQVYRGHTNEKNFVGLTANSEYISCGSETNEVFVY
HKAISKPVARYKFNASEMHDGDEDRGSHFISAVCWKSDSPVIMAANSQGNVKLFSLAA
NT seq
1977 nt
NT seq
+upstream
nt +downstream
nt
atgccggaaatctccattggagaaggagctcttgttccttacatgaagtccgattctccg
ccgaatgagacaccagatggcggtggagaatccgtttccggcgacaaggattttctatgc
cctatttgcatgcagattatcaaggacgcttttctcactgcttgcggccatagctactgc
tatatgtgtatcttcactcatcttcgcaacaagaatgattgcccttgctgttctcgtttt
ctcactcctaagcttatttttcctaattttgccctcaataagatattgaagaagatgtct
aattatcaatttggaaaaagtgcctctttgagtgaacaacttcgccgaactctgcagcag
ggttgtgacgtgtctgtgaaggatcttgactgccttttgtctctactcggggaaaagaag
agaaagatggagcaagaagaagctgagacaaatttgcaagttcttcttgagtttttggtt
tgcttaagaaaaggaaagttggaagagcttagtcagatacaaaatgatctccagtacatc
aaagaggatatagatgctgttcaaaagcacaaaacagaattgtggaatgtaaacaagagt
cgtacagttagattgagaatgagaggggatgactttgacacaaaaggttctggtcatacg
atactgaggcccatggttgatggttctggtacacaagtgacgatttcaggaagtttacca
tgtggagaagtcaatgtaggtgctccagtctctcaagaatgtttggaaaatgatgttcgt
gcaggctcaaaattgcagcagcaggctccaacagaaaaatataaagcaagaaaacggcag
gtcgaggcgcagttcactgacctgcaagaatgttacctgcaaaaaaggagacaccgggca
aaacaaaaacaagcagcagaagggcggaatctgaataatatgaataacctaggctatcat
gctggacttgaagatttctggtctgtgctcacttcctgtactcgatacagccaattgaag
gctatttcagagttgaggcttggcaatgtttttcactcagccaatattatttccagcata
gaatttgatagagaccatgaattgtttgcaactgccggtgtctccaagcggattaaagtt
ttcgaattttcctctgtggttgaggagccagcagaagtgcactgtgctgttgttgacatt
gctacacgatccaaactaagttgtttgagttggaataagtatacaaaacattatattgct
agcagtgactatgaggggattgtaactgtttgggatgttgctactaatcagagtgttgga
gaatacgaggagcatgaaaaacgggcttggagtgtggatttttcgcgcactgaaccttcg
ctgttggtatctggcggggatgactgcaaggttaaagtttggtgcaccaaacaggaaaag
agtgctcttaatatcgacttgaatgcaaatatatgttccgtgaagtgtaatcctggatct
agcatgcatgtggcggtggggtctgcagatcataatgttcactactatgacttgagaaac
attagccagcctgttcacgtcttctctggtcacagaaaagctgtttcatatgttcatttc
ttgtctgccaacgagcttgcttctgcatcaactgatagcactttgcgtttgtgggatgtc
aaggaaaataagccgctacaggtgtatagaggtcatacgaacgagaagaattttgtaggc
ctcacagctaacagtgaatacatttcttgtggcagcgaaacaaacgaggtgtttgtttat
cacaaggcaatctcaaagcccgttgctcggtacaagttcaatgcatcagaaatgcatgat
ggtgacgaggatcgggggtcgcactttattagtgcagtttgttggaagagtgatagccca
gtgataatggctgctaacagtcaaggaaacgtcaaactattttctctagctgcctaa
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