Spinacia oleracea (spinach): 110778395
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Entry
110778395 CDS
T05137
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 8-like
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
soe
Spinacia oleracea (spinach)
Pathway
soe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
soe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110778395
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
soe03019
]
110778395
03036 Chromosome and associated proteins [BR:
soe03036
]
110778395
Enzymes [BR:
soe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
110778395
Messenger RNA biogenesis [BR:
soe03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
110778395
mRNA degradation factors
5'-3' decay
Decapping complex
110778395
Chromosome and associated proteins [BR:
soe03036
]
Eukaryotic type
Gene silencing
piRNA pathway
110778395
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
TFIIA
VPS13_N
Endonuc_Holl
eIF-3_zeta
Motif
Other DBs
NCBI-GeneID:
110778395
NCBI-ProteinID:
XP_021838650
UniProt:
A0A9R0JLG3
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All DBs
Position
6:139886872..139905627
Genome browser
AA seq
509 aa
AA seq
DB search
MNHNSRPRYPPGIGNGRGGGYAQQNPNFQTRPPYHHQQHHNQPHYVPRNAPPQNQHQYQQ
QQHQQQQQQQQQQQQQQQQQWMMRRPANSADEIEKSAQTPRSAVDSSSEDWKANLKLPPP
DTRYMTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAK
NGTGKTAAFCVPVLEKIDQDNNVIQAVILVPTRELALQTSQVCKELGKHLNVQVMVTTGG
TSLKDDIMRLYQPVHLLVGTPGRILDLAKRGICVLKDCSMLVMDEADKLLSPEFQPSLEQ
LISFLPGNRQILMFSATFPVTVKDFKDRYLQKPYVINLMDELTLKGITQFYAFVEERQKL
HCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRN
GACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRYGHLGLAVNLITFED
RFNLYKIEQELGTEIKQIPPHIDQGIYCR
NT seq
1530 nt
NT seq
+upstream
nt +downstream
nt
atgaaccacaactcccggccgcgctatccgccggggatcggcaatggtcgcggtggaggt
tacgcgcaacaaaaccctaattttcaaaccaggccgccgtaccaccaccaacaacaccac
aatcagcctcattatgtgccgcgaaacgcaccgccgcagaatcaacatcaataccaacaa
caacagcaccaacagcaacaacagcagcagcagcaacaacaacaacaacaacagcagcag
tggatgatgagacgacctgctaattctgctgacgaaattgagaaatctgctcaaacacct
cgttctgctgtggattctagttccgaagattggaaggcaaaccttaagcttccaccgcct
gatactcgttacatgacagaggatgtcactgctacaaaaggaaatgagtttgaggattat
ttcttgaaacgtgaactacttatgggaatatatgagaagggattcgaacgtccttctcca
atccaggaggaaagtataccaattgctttgacaggaagtgatattcttgcaagagctaaa
aatggaactggtaaaacagccgcattttgcgtccctgtgctggaaaaaattgaccaagac
aacaatgtaattcaagctgttatacttgttcctaccagagagttagcccttcaaacatca
caagtatgtaaagaacttggcaagcatttgaacgtccaggtcatggtaacgacaggaggg
actagtttgaaggacgatataatgcgtctgtaccaaccagtgcatttgctagtcggaaca
ccaggaagaatactagatcttgcaaaaaggggtatatgtgttctgaaggactgctccatg
cttgttatggacgaggctgacaaacttttgtcccccgaattccaaccttctttggagcag
ttgattagttttcttcctggaaacaggcagatattgatgttttcagctacttttcctgta
actgtcaaagatttcaaagatagatatttgcaaaagccttacgtcatcaaccttatggat
gagcttactctcaaaggtattacccagttttatgcttttgttgaagaaagacagaagctc
cattgcctgaacacgcttttctcaaagctgcaaataaaccaatccattattttttgcaat
tctgtgaatcgagtggaattgttggccaagaaaattacagagcttggttattcttgcttt
tacatccatgcgaagatgctccaggaccatcgaaacagagtatttcatgatttccgcaat
ggtgcctgcaggaatcttgtttgcacagatttgtttacaaggggtatagacattcaagca
gtaaatgttgtaatcaattttgatttcccaaaaaactcggaaacctatctgcacagagtt
ggtcgttctggaagatatgggcaccttggattggctgttaacctaatcacatttgaggat
cgctttaacttgtacaagattgagcaagagctcgggactgaaattaagcaaattcctccg
cacatagatcagggtatctactgccggtaa
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