KEGG   Spinacia oleracea (spinach): 110780022
Entry
110780022         CDS       T05137                                 
Name
(RefSeq) replication factor C subunit 2
  KO
K10755  replication factor C subunit 2/4
Organism
soe  Spinacia oleracea (spinach)
Pathway
soe03030  DNA replication
soe03410  Base excision repair
soe03420  Nucleotide excision repair
soe03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:soe00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    110780022
   03410 Base excision repair
    110780022
   03420 Nucleotide excision repair
    110780022
   03430 Mismatch repair
    110780022
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:soe03032]
    110780022
   03036 Chromosome and associated proteins [BR:soe03036]
    110780022
   03400 DNA repair and recombination proteins [BR:soe03400]
    110780022
DNA replication proteins [BR:soe03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    110780022
  DNA Replication Termination Factors
   ELG1-RFC complex
    110780022
Chromosome and associated proteins [BR:soe03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    110780022
DNA repair and recombination proteins [BR:soe03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     110780022
  Check point factors
   HRAD17(Rad24)-RFC complex
    110780022
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 AAA_14 AAA_22 Mg_chelatase Rad17 AAA_16 Viral_helicase1 AAA_24 RuvB_N AAA_11 RCF1-5-like_lid AAA_5 AAA_assoc_2 AAA_25 AAA_19 ABC_tran nSTAND3 DNAX_ATPase_lid AAA_28 AAA_30 IstB_IS21 AAA_18 bpMoxR RNA_helicase MeaB DO-GTPase1 NTPase_1 AAA_3
Other DBs
NCBI-GeneID: 110780022
NCBI-ProteinID: XP_056689192
LinkDB
Position
6:complement(143202705..143205903)
AA seq 330 aa
MASSSSSSGYEVPWVEKYRPNKVADIVGNEDAVSRLQVIARDGNMPNLILAGPPGTGKTT
SILALAHELLGPNCKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKIVILDEAD
SMTSGAQQALRRTMEIYSNTTRFGLACNTSSKIIEPIQSRCALVRFSRLSDQEILGRLMI
VIEAEQVPYVPEGLEAIIFTADGDMRQALNNLQATFSGFRFVNQENVFKVCDQPHPLHVK
SMIRNVLEGKFDDACSGMKNLYDMGYSPTDIITTLFRVVKNYDMAEYLKLEFMKETGFTH
MRICDGVGSYLQLCGLLAKLSLIRETAKAA
NT seq 993 nt   +upstreamnt  +downstreamnt
atggcgtcgtcttcatcgagtagcggatacgaggtaccatgggtggagaagtacagaccc
aacaaggttgctgacatcgtcggcaacgaagatgctgtctctcgcctccaagtcatcgct
cgcgacggcaacatgcccaatctcatcttggccggtcccccgggtacaggaaagacaaca
agcatactagctcttgcacacgagcttttaggaccaaactgcaaggagggagttctggag
ttgaatgcttcagatgataggggaattgatgttgtgaggaacaaaattaagatgtttgcg
cagaagaaagtaactctgcctcctgggcgacacaagatagttatattggacgaagctgac
agcatgacatctggagctcaacaggctttgagaaggacaatggaaatttactcaaacacc
actcgctttggtcttgcatgtaatacttcttcaaaaatcattgaacccatccagagtaga
tgtgcattggtccgcttttcaaggttatcagatcaagaaattcttggtcgcctcatgata
gtcattgaagctgagcaggttccatatgttccagaaggtcttgaagccataatcttcact
gctgatggtgatatgcggcaagctttgaataacttgcaggctaccttcagtggatttcga
tttgtcaaccaagaaaacgttttcaaggtttgcgaccagcctcatcctttgcatgtcaag
agcatgattcgaaatgtacttgaagggaagtttgatgatgcttgttctggtatgaagaac
ctctatgatatgggttactcccctactgacataattacaaccctcttccgcgttgttaaa
aactatgacatggccgagtatttgaagttggaatttatgaaggaaactgggtttacccat
atgagaatttgtgatggagttggttcttatcttcagctatgcggacttctggctaagcta
tcacttatcagggagacagctaaagcagcctga

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