Spinacia oleracea (spinach): 110780142
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Entry
110780142 CDS
T05137
Name
(RefSeq) probable NOT transcription complex subunit VIP2 isoform X1
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
soe
Spinacia oleracea (spinach)
Pathway
soe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
soe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110780142
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
soe03019
]
110780142
Messenger RNA biogenesis [BR:
soe03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
110780142
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
110780142
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
110780142
NCBI-ProteinID:
XP_021840259
UniProt:
A0A9R0I2D2
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Position
3:4836666..4845207
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AA seq
579 aa
AA seq
DB search
MHGGFNVPNMSGSLTSRNSSMNNVASGGVQQPTGNIPGGRFASNNIPIALSQMTHGSSHG
GYSGVTNRGGMNVVGSPGYSSNTNGVGGSIPGILPTSAAISNRSAVPGLGVSPVLGNSGP
RVTGSVGSMVGSGNIGRSIGSGGGLSVPGLASRLNMSANSGSGNLGVQGSNRLTGGVLQQ
ASPQMLSMFGNSYPSAGGPLSQNHVQSVNSLSSMGMLSDDNSNDAPFTLNDFPQLGSRPN
SAGGPQGQIGSMRKQGLGVSPIVQQNQEFSIQNEDFPALPGFKGGSADYGIDFQQKEQIH
DNGVPMQSQHFSMGRSPGFNLGGMYSSHRPQQQQHSLSSSMPPGISLRSINSPGGVSNMN
TYEQQFLQQYQQHNQSQFRLQQLPSLNQTFRDQGIKPIQSPQAAPDPYGLLGLLSVIRMS
DPDLTSLALGLDLTTLGLNLNSSENLHKTFASPWAEEPAKGEPEFLIPECYHEKQPPPLS
QAYFAKFQLPTLFYIFYSMPRDEAQIYAANELYNRGWFYHKDIRVWFMRAPNMEPLVKTN
AYERGSYVAFDPNTWDTTVKENFVIHYELVEKRPTLHHQ
NT seq
1740 nt
NT seq
+upstream
nt +downstream
nt
atgcatggtggctttaatgttcccaatatgtcgggttcacttacatccagaaattcatca
atgaataacgtcgcttctggtggcgttcaacaaccaacagggaacattccagggggtaga
tttgcatcaaataatatccctattgctctctctcagatgacccatgggagctcacatggt
ggatattcaggagtcacaaatagaggaggtatgaatgttgtaggaagccctggatatagt
agtaacacaaatggtgttggtggttctattcctgggattctcccgacttctgctgcaatt
agtaatcgtagtgctgttccaggcctaggagtttcgcccgtgttgggaaattcaggtcct
cgagttactggctcagtgggaagtatggttggcagtggcaacattgggaggagtataggt
tcaggtggaggactatctgtgcctggtcttgcttctcgcttgaatatgtcggcaaacagt
ggatctgggaatttaggagtgcaaggatcaaatagattaacgggaggtgtgctccaacaa
gcttctccgcagatgctttctatgtttggaaactcatatccttctgccgggggcccactt
tcgcagaaccatgtccaatcagtgaatagtttaagttccatgggaatgttaagcgatgat
aattccaatgacgccccttttacgttaaacgactttcctcagttaggtagccgccctaac
tctgctggaggtccgcaaggacaaataggttctatgcgaaaacaaggcctcggtgttagt
cccattgttcagcagaaccaggaatttagcatccaaaatgaggattttcctgccttacca
ggtttcaaaggtggaagtgcagattatgggatagattttcagcaaaaggaacagattcat
gataatggtgtaccgatgcaatctcaacacttctctatgggaaggtcgcctggattcaac
ttaggaggaatgtactcatctcaccgtccacaacagcagcagcattcactttctagcagc
atgccccctggcataagcttaaggtccataaactctcccggtggggtttctaatatgaat
acttatgagcagcagtttttgcagcagtatcaacaacataaccagtcacaatttcgccta
caacagttgccatctctcaatcagacttttagagatcagggcataaagccaatacaatct
ccacaagctgctccagatccatatggattacttggcctattgagtgtgataagaatgagc
gatcctgatctgacttctcttgccctcggactcgatttaacaacgttgggattgaatttg
aattcatcagaaaatcttcacaaaacttttgcctccccttgggccgaagagccagccaag
ggtgaacctgagttcttgatacctgaatgttatcatgaaaaacaacccccccctctaagt
caagcttattttgcgaagtttcagctgccaacactgttctacatcttttacagcatgcca
agagatgaagcccagatatatgcagccaatgaactttataacagaggttggttctatcac
aaagacatccgggtttggtttatgagagctcctaacatggaacctcttgttaagacgaac
gcatatgaaagaggttcttatgttgcctttgatcccaatacatgggatacaactgttaag
gaaaatttcgttatccattatgaacttgttgagaaaagaccgactcttcatcaccaatag
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