Spinacia oleracea (spinach): 110780172
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Entry
110780172 CDS
T05137
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 8-like
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
soe
Spinacia oleracea (spinach)
Pathway
soe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
soe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110780172
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
soe03019
]
110780172
03036 Chromosome and associated proteins [BR:
soe03036
]
110780172
Enzymes [BR:
soe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
110780172
Messenger RNA biogenesis [BR:
soe03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
110780172
mRNA degradation factors
5'-3' decay
Decapping complex
110780172
Chromosome and associated proteins [BR:
soe03036
]
Eukaryotic type
Gene silencing
piRNA pathway
110780172
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
TFIIA
CMS1
Motif
Other DBs
NCBI-GeneID:
110780172
NCBI-ProteinID:
XP_021840285
UniProt:
A0A9R0JN21
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Position
2:103204928..103214205
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AA seq
550 aa
AA seq
DB search
MNDNVRGRFPPGMGRGRGGLGVDVGGLGGGGRGGGGGGGGMGGNPNFQGGNFQQQQHYVQ
RGYNNNMQNHHQQQHQFQRQQQQQQHEQHFQHHQQQLQQHKQQQQHQQQQQQQQQQQQWL
RRNQLGGTTETNVEEVEKTVQSEGIDSSSQDWKIGLKPPPQDTRFRTEDVTATKGNEFED
YFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCVPALEKIDQ
DNNVIQVVILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLHQPVHLLVG
TPGRILDLAKKGICVLKDCSMLVMDEADKLLSPEFQPSIEQLIQFMPTSRQILMFSATFP
VTVKDFKDRYLHKPYVINLMDELTLKGITQFYAFVEERQKVHCLNTLFSKLQINQSIIFC
NSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQ
AVNVVINFDFPKNAETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYKIEQELGTEIKQIP
PFIDQTIYCR
NT seq
1653 nt
NT seq
+upstream
nt +downstream
nt
atgaatgacaacgttagaggtcgttttccgccaggaatgggcagaggaagaggcggatta
ggcgtagatgtaggtggtctaggtggtggtgggcgcggtgggggaggcggcggtggtggg
atgggtggaaaccctaactttcaaggtgggaattttcagcagcagcagcattacgtgcaa
agggggtataacaacaatatgcaaaatcatcaccaacaacagcatcaatttcagcgtcag
caacagcaacaacaacatgaacaacattttcagcatcatcagcagcagctgcagcagcac
aagcagcaacaacagcaccaacagcagcagcagcagcaacaacaacaacagcaatggctt
aggaggaatcagttagggggtacaacagagaccaacgtcgaggaggtcgagaaaacagtg
cagtctgaagggattgactcgagttcacaagattggaagatagggttgaagccaccgcca
caagacacacgctttagaacagaggatgtgacggccactaaagggaacgaatttgaagac
tattttctgaagcgtgagttactgatgggtatatacgagaagggtttcgaaaggccatcc
cctattcaggaagaaagtattccaattgcgctcactggtagtgatattctagccagagcg
aagaacgggacaggaaaaactgctgctttctgtgttcctgctttggaaaaaatcgatcaa
gataacaatgttattcaagttgtcatacttgttcctacaagggaattggcactccagaca
tcacaggtttgtaaagagcttggaaagcatctgaaaattcaagttatggttaccactggt
ggaaccagtttgaaggatgatattatgagattgcatcagccagtccatttacttgtggga
actcctggacgaattttagatcttgcaaagaaaggaatttgtgttttgaaagactgttcg
atgcttgtaatggatgaggctgataagcttttgtctccggaatttcaaccatctatagag
cagcttatccaatttatgccaacaagtcgtcagattttaatgttttcagctacatttcct
gtcactgttaaagatttcaaagatagatatctacataagccttatgttatcaacttgatg
gacgagcttaccctgaagggtataacacaattctatgcttttgttgaagaaagacaaaaa
gtccactgcctgaacacccttttctccaagcttcaaatcaaccagtcaattattttttgc
aattcggtgaatcgtgttgagttgctagctaagaagataacagagcttgggtattcttgc
ttttacattcatgccaagatgctgcaagatcaccgtaacagagttttccatgattttcgt
aatggggcgtgtcgtaatcttgtgtgcactgatttatttactaggggaatagacattcag
gccgtcaatgttgttatcaatttcgacttcccaaagaacgctgaaacctatcttcatagg
gttggtcgatcaggaaggtttggccatcttggtttagctgtgaatttgatcacttatgaa
gaccgttttaacttgtataagattgagcaagaacttggaactgaaataaagcagattcct
ccgtttatagatcaaactatctactgtcgttaa
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