Spinacia oleracea (spinach): 110781635
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Entry
110781635 CDS
T05137
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein PRP4-like protein
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
soe
Spinacia oleracea (spinach)
Pathway
soe03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
soe00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110781635
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
soe03041
]
110781635
Spliceosome [BR:
soe03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
110781635
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_WDHD1_1st
EIF3I
WD40_CDC20-Fz
Beta-prop_CAF1B_HIR1
Beta-prop_EML_2
WDR55
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
Beta-prop_TEP1_C
Beta-prop_IFT122_1st
WDR90_beta-prop_4th
Beta-prop_WDR75_1st
Beta-prop_EML
WD40_MABP1-WDR62_1st
Beta-prop_EIPR1
ANAPC4_WD40
NBCH_WD40
Pol_BBD
Beta-prop_RIG_2nd
Beta-prop_SCAP
Beta-prop_DCAF4
WD_LRWD1
WD40_RFWD3
WD40_like
Beta-prop_WDR19_1st
Beta-prop_SPT8
Beta-prop_IFT140_1st
Motif
Other DBs
NCBI-GeneID:
110781635
NCBI-ProteinID:
XP_056688507
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Position
6:complement(99158804..99165933)
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AA seq
416 aa
AA seq
DB search
MAIEGLQICDITLAIVLIEKLPTSWKDFQANSTASATVQGKGKIILTLTSGKLITITNVL
HVKEMCRNLISGSLLMKAGLKLSFDSNKLVITRNREFAGKGFCQKMKLRRCSSNTRHKWK
TNLIEISRELGVTGVIWRAWCLTVHSISHDCGAIALNYETGLSFLKASTNGMFIACFVSL
ALLVGLPRYGVYVAFSPVSDNVATASADRTAKLWNTYGTLLRTFEGHLDRLARIAFHPSG
KYLGTTSFDKTWRLWDIESGAELLLQEGHSRSVYAISFHPIGSLLASCGLDSLTRVWDLR
TGRSILALEGHIKPVYGVDFSPNGYHLATGSEDNTCRIWDLRKKKSLYIIPAHSKLISQV
KFEPQEGYYLVTASYDTTVKVWSSRDFKLIRTLSGHEARVTPLDVTGGKIFSLGKL
NT seq
1251 nt
NT seq
+upstream
nt +downstream
nt
atggctattgaaggccttcaaatctgtgatattactcttgctattgtgttgattgagaaa
ctccccacatcatggaaagactttcaagctaactcgacagcttctgcaactgttcaagga
aaaggaaagatcattctcactcttacttctggaaaacttattactattacaaatgtgttg
catgttaaagaaatgtgtaggaacttgatttctggtagcttgctcatgaaggctggactg
aagctttcatttgattccaataagcttgttattactcgcaatagagaatttgcgggaaag
ggtttttgtcaaaagatgaagttgaggagatgttcctcaaatacaaggcataagtggaaa
accaacttgatagaaatatcaagagagttaggagtgacaggggtgatatggagagcatgg
tgcttaactgtgcattcaattagccatgattgcggggccattgccctaaattatgagact
ggtttgtcatttttgaaggcgagtactaatggtatgtttattgcttgttttgtttcttta
gctctgttagtggggttgccaagatatggagtatatgttgcattttctcctgtaagtgac
aatgtagcaactgcctcagctgatcgtactgcaaagttgtggaacacatatggcacttta
ttgagaacatttgaaggtcatttagaccgcctagctcgtattgccttccatccatctggg
aagtacttgggcactacaagttttgacaaaacttggcgtttgtgggatatcgaaagtggt
gctgagttgcttcttcaagaaggccatagcaggagtgtttatgccatatctttccatccg
attggatcattgttagcatcatgtggactggattctcttacacgtgtctgggatcttcga
acagggagaagtattcttgctttggaaggccacatcaaacctgtttatggagttgatttc
tctcctaatggctatcatttggccactggttctgaggataacacttgtcggatttgggac
ttgagaaagaaaaagtcattgtacataattcctgcccattcaaagcttatttcacaggtc
aaatttgagcctcaggagggatattatttggtcactgcttcatatgatacaactgttaag
gtatggtcatctcgagacttcaagcttatcaggacattgtcaggacatgaagcaagagtt
acacccttagatgtcacaggaggtaagatcttttctcttggtaaactgtag
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