Spinacia oleracea (spinach): 110781912
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Entry
110781912 CDS
T05137
Name
(RefSeq) putative CCR4-associated factor 1 homolog 8
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
soe
Spinacia oleracea (spinach)
Pathway
soe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
soe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110781912
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
soe03019
]
110781912
Messenger RNA biogenesis [BR:
soe03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
110781912
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
110781912
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
DUF5406
Motif
Other DBs
NCBI-GeneID:
110781912
NCBI-ProteinID:
XP_021841650
UniProt:
A0A9R0JPC9
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Position
5:2813192..2814319
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AA seq
375 aa
AA seq
DB search
MKNQLEVVQVSTSNLDEQIDNLSHKLDHYPNISIDTEFGWFKRDININGTDLEIYEDLKY
NLIHSNLREIGITVSDNGGEVGGTWRFDFFPSKKAGITLRDCIPTKKFITRFKKLMQDFH
GKVKWFTFAGYFDVAHLVSLLERKPLPELIKSSPATATTTATTYNVDGEEGFVEVVQRYF
GKVYDLKVIAKHYENLFGKNKYLGLQRLANQIGVKRVGREHDGASDSLLTASIFAKFTEF
GWISDSDQGFLSLLPHQVCYDSTKMMIQTKNEEDTSITTSTNMEPAHQPYPRPVNGPVTG
YPMGHYPVPQYDPRFQHGPVYGYGPRPMIGPVRFGPVMSPGPGILRTTPYGTLFYPAVRV
FHHQPPHMISLVPGY
NT seq
1128 nt
NT seq
+upstream
nt +downstream
nt
atgaagaaccagcttgaagttgttcaagtatcaacgtccaatctcgatgagcaaatcgat
aatcttagtcacaaattagatcattacccaaatatatccatcgataccgaattcggatgg
ttcaaacgagacataaacattaacggtactgatcttgagatatacgaagatctcaagtac
aatctcattcattccaatctacgtgaaatcggaatcacggtgtccgataatggcggtgaa
gtaggcggaacttggcggtttgatttttttccatctaagaaggctggtattacgctacgt
gattgtattcctacgaagaagttcatcacaagattcaagaaattgatgcaagattttcat
ggaaaggtgaaatggtttacttttgctggttattttgatgttgcacaccttgtttcttta
cttgaaagaaaaccattaccggagttgataaaatcatcaccggcgacggcgacgacaacg
gcgacgacatacaacgtagacggtgaagaagggtttgtggaagtagtacagaggtacttt
ggaaaagtgtatgatcttaaagtaattgctaaacattatgaaaatttatttgggaaaaat
aagtatttagggttacaaagattagctaatcagattggtgttaaacgagttggaagagaa
catgatggtgcttctgatagtttgttaactgcgagtatttttgcaaaatttaccgaattc
gggtggatttcggattcggatcaagggtttctttctttacttcctcaccaagtttgctat
gattctactaagatgatgatacagacgaagaatgaagaagatacgtcaataacgacttca
accaacatggaacccgcccatcaaccctatcctcggcccgttaatggaccggtaaccggg
taccctatgggtcattatccggtaccacaatatgatccaagatttcagcatgggccggtg
tacgggtatgggccaagaccaatgattgggcccgttcgatttggaccggttatgagcccg
ggtccagggatattacgtacaactccatatggaactttgttctacccggcagtgagggta
ttccatcaccaacctccacatatgatatcattagttcccggttattag
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