Spinacia oleracea (spinach): 110782099
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Entry
110782099 CDS
T05137
Name
(RefSeq) enhancer of mRNA-decapping protein 4
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
soe
Spinacia oleracea (spinach)
Pathway
soe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
soe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110782099
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
soe03019
]
110782099
Messenger RNA biogenesis [BR:
soe03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
110782099
mRNA degradation factors
5'-3' decay
Decapping complex
110782099
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EDC4_C
Ge1_WD40
WD40_WDHD1_1st
WD40
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
WDR55
Beta-prop_TEP1_C
Beta-prop_EML_2
WD40_MABP1-WDR62_2nd
Beta-prop_RIG_2nd
Motif
Other DBs
NCBI-GeneID:
110782099
NCBI-ProteinID:
XP_021841875
UniProt:
A0A9R0JPK2
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All DBs
Position
2:complement(109076653..109090186)
Genome browser
AA seq
1373 aa
AA seq
DB search
MASTGNPNQHQQPPQQQPQQGGVGGQFDMNKFFKASNLPSPPLPQPPQNPNNMGGPTPSA
SYPPPTAGPYSFPPQNPSPPYFHHLPNFPPQDQLPNLHHQRSVSFPTPPLQPVPSAPPQN
PNPGARLMALLSSPPPDFNYSHQNPTPVPAPMPSPSDYSMPASVPVSPSVQPIHGGMVQA
APIRMPSSKLPRGRHLVGDHMLYDIDARLPGEEQPQLEVTPITKYGSDPALILGHQIAVN
KTYICYGLKLGNIRVLNINTALRSLLRGHTQRVTDMAFFAEDVHLLASASIEGRVYVWKI
SEGPGKEEKPEISGNVVLAIHITGDEGSVHPRVCWHCHKQEILVVAIGKSVLKIDTTKVR
KGVDFSGEDALVCPLDKLIDGVQLVGKHEGEVTDLSMCQWMTTRLVSASKDGTIKIWEDR
KAAPLLVLRPHDGHPVDAAKFLAAPHRPDHIMLITAGPLNREVKLWASSDEEGWLLPSDA
ESWRCIQTLEMKSSAEPRNEEAFFNQVVALSQGGLLLLANAKKNAIYAIHLEYGTTPAAT
RMDYLSEFTVTMPILSFTGTSDILPHGEHLIQVYCVQTQAIQQYALGLSQCLPPPLDNLS
LEKSDSIVSRDAVECVPALEPSGSKSFEVPFSASKPSNHISALGSPSEIKCPVGDASDAT
PDITTSNADSTPTSLLPASSNADVVSVASLPLSPRLSKRLSDLRGDQSANDYSVERQMDS
AHTSSSALPASNEDSRPVQGNASDVVSPPKMFKHPTHLVTPFEIMATSSADATRVSEKGE
NEAKNQDVIVSSDTGNVEVEAKVVGETGFANTDESSRQVDPQIITDRKEKSFFSQASDLG
ADMSRECCALPTETSIMEEARSSIMEALAQPSNSGEEEGDEASNDMSGKAADFAVSTTVP
QSPTPGIKGKKQKGKNSQAPGSLSPSPSVSNSVDLFQGAAMEPSGSQMLAMHETLNQILN
VQKEMQKQMSTVVSTPVTKEGRRIEAALGRSVEKALKANSDALWARTQEEITKLDKSLRD
RMQQTHGLINNIVNKDLVAVLERTLKKELAVVGTNVARAISPAIEKTITSSITDSFQRGV
GDKAVGQLEKSVTSKLEATVARQIQTQFQTSGKQALQDGLRSCLEASVIPAFEMSCKAMF
EQVDSAFQKGMAEHTAAAQHQVESTNSQLALTLRDALASASSLTQTLSGELADNQRKLLA
LAAAGANSKAGNPLATQLSNGPLAGLHEKVEQPYDPTKELSRLISEHKYEDAFTAALQRS
DVTIVSWLCSQVDLQRLLSTVPLPLSQGVLLSLLQQLSCDITKDTARKLAWMTDAAACIQ
PHDPMIAVHVRPILEQVYQILNHQRSLPSASPAELSSIRVVMHVINSMLLSCK
NT seq
4122 nt
NT seq
+upstream
nt +downstream
nt
atggcttctactgggaatccaaatcaacaccagcaaccgccgcagcaacaaccacaacaa
ggcggtgtcggaggtcaattcgatatgaataagttcttcaaagcctctaatttaccctca
ccaccgctacctcaaccgccgcaaaaccctaacaacatgggtggtccaactccgtctgct
tcataccctccacccactgctggaccctactccttcccacctcaaaaccctagtcctcca
tactttcaccatttgcccaacttccctcctcaagatcaactccccaatttgcatcaccag
aggtctgtctccttccctacaccccctcttcagcctgtccctagtgctcctccccagaat
cccaacccaggtgctcgtctcatggcgttgctcagtagtcctcctcctgatttcaattac
tctcatcaaaaccccacccctgtacccgcccctatgccatctccctccgattattctatg
cctgctagtgtccctgtttccccctctgtgcagcccattcatggcggtatggtgcaggcc
gcccctattcgtatgcccagcagtaagcttcccaggggacgtcatttggtcggtgatcat
atgctttatgatattgatgctaggttgccaggcgaggagcagcctcagttggaggttact
cccatcactaagtatggctctgatcctgctctcatccttggtcatcaaattgctgtcaac
aaaacctacatttgttatggtcttaagttgggcaacattcgtgttcttaacataaacaca
gctttgaggtctttgctacgagggcatactcagagggtaacagatatggccttctttgcg
gaagacgttcatcttctggctagtgcaagcatagagggacgagtttatgtatggaagatt
tctgaaggcccaggtaaggaagaaaagccagaaatttctggaaatgtcgtgctagctatt
catattactggggacgaaggatctgttcatccacgggtttgctggcactgtcacaaacaa
gaaattcttgtcgtggccatcggtaagagtgtccttaaaattgatactacgaaggtgcgc
aagggtgttgatttttctggagaggacgctcttgtgtgtcctttggacaagctgatcgac
ggggttcagctggttggtaaacatgaaggggaggtcaccgatttgtcaatgtgccagtgg
atgacaacacgtttggtttcagcttcaaaggatggaacgattaagatttgggaagatcgc
aaggcagcaccgcttctagtattgaggccccatgatggtcatcctgttgacgcagctaag
tttttggctgctccacatcggccagaccatatcatgcttatcacagctggaccacttaat
cgagaggtgaagctttgggcttcatctgatgaagaaggatggttgcttcccagtgatgct
gaatcttggcggtgcatacagacactggagatgaagagttctgctgaacctcgaaatgag
gaagcatttttcaatcaggttgtggcattatctcaaggggggcttcttttacttgcaaat
gccaaaaagaatgctatatatgcaattcacttagaatatggtaccaccccagcagcaacc
cgcatggattatttatcagagtttactgtaactatgcctatcttgagctttactgggaca
agtgacatcttacctcatggagaacaccttattcaagtttattgcgtccagacgcaagcc
atacagcagtatgctttgggcctctcacaatgcttgccaccacctttggataatttgagt
ttagaaaagtcggattccattgtttctcgtgatgcagttgaatgcgttcctgccttagag
ccatctggaagcaaatcttttgaggttcccttttctgcatcgaaaccaagtaatcacatc
agtgccctcgggagcccatctgagattaagtgtcctgtgggcgatgcttctgatgcaacc
ccagatatcacgacttcaaatgcggattctacccctacttcattattaccagcatcaagc
aatgctgatgttgtgtctgttgcttctcttcctcttagtccaaggttgtctaaaagactc
agtgatttgcgtggtgatcaatctgctaatgattattcggttgaaagacaaatggatagt
gcacatacaagttcatccgctttgcctgcctcaaatgaggatagcagacctgtacaaggg
aatgcttctgatgttgtcagtccacctaagatgtttaaacacccaactcatcttgttact
ccttttgagattatggctacatcatcagctgatgcaacccgtgtttctgaaaaaggtgaa
aatgaggccaaaaatcaagatgtaattgtgagcagcgacacaggaaatgttgaggtggag
gctaaagttgttggtgaaactggatttgccaacactgatgagtcttctcggcaagtagat
cctcaaatcataacagatagaaaggagaaatcctttttttctcaggcatctgatcttggc
gctgatatgagtcgagagtgttgtgcattaccaactgagacatctatcatggaagaagct
agaagtagcataatggaggctctagcgcaaccttcaaattctggcgaggaggaaggggat
gaagccagcaatgatatgtccgggaaggctgcagactttgctgtctcaacaacagtgcca
cagtctcctacaccaggcatcaaagggaaaaagcagaaggggaagaattctcaagcaccc
ggttcattatccccttcaccgagtgtttcaaattcagtggatttgtttcaaggggctgca
atggaaccttctggttcacagatgcttgctatgcatgaaactcttaatcagatactaaat
gtgcagaaagaaatgcaaaagcagatgagcacagtagtttctacaccagttactaaagaa
ggaagacggatagaggcggctttgggacggagtgtagagaaggccctgaaggccaatagt
gatgctttatgggctcgtacacaggaggagatcactaaacttgataagtccttacgagat
cgtatgcagcaaacacatggtctgataaataatattgtgaacaaggaccttgttgcagtg
cttgagagaacattgaagaaagaattggctgttgttggcacaaatgtagctcgtgcaata
agtcctgctattgagaaaactattacttcgagtattacggattccttccagagaggagtt
ggtgacaaggcagtgggtcaacttgagaagtctgtaacttcaaaacttgaagctactgtt
gccaggcaaatccaaacacagttccagacgtctggtaaacaagcacttcaggacgggttg
aggtcttgtttggaggcttctgtcatccctgcttttgagatgtcctgcaaagcaatgttt
gagcaagttgattctgcattccagaagggaatggctgaacatacagcagcagcacaacat
caagttgaatcaacaaattctcagctagcccttaccctgagggatgctctagcctcagca
tcgtcactaactcaaaccttgagcggagaattggctgataatcagcggaagttgttagct
cttgcagctgctggtgcaaactcaaaagcaggaaatccattggccacccaattaagtaat
gggcctttggcgggtctacatgagaaggtggaacagccgtatgatccgaccaaagagctt
tctagactgatctcagaacacaagtatgaggatgcatttactgctgctttgcaaagaagt
gatgtaaccattgtctcctggctatgttctcaggttgatttgcagcgtcttttatcaacg
gtgcctttgcctttgagtcaaggcgtgttactctcacttctgcagcagctctcttgtgat
ataacaaaggatacagctagaaagttagcctggatgacagatgccgctgcatgcatacaa
ccgcatgatccaatgattgcagtgcacgtgcgtccgattttggagcaggtttaccagata
ttgaaccatcaacgtagccttccttccgcttcaccggcagagttatcaagcatccgtgtc
gtcatgcatgttatcaactccatgttgctttcctgtaaatga
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integrated database retrieval system
